Cluster no. 103

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Cluster is part of supercluster: 49

Cluster characteristics:

size 408
size_real 408
ecount 2708
supercluster 49
annotations_summary 25.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
15.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.721518987341772
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00245098039215686
satellite_probability 1.17014641654426e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 145
S9 142
S7 121
comparative analysis - number of edges between species:
S8 S9 S7
S8 343 332 296
S9 332 308 282
S7 296 282 235
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.984 1.000 1.010
S9 1.000 0.979 1.020
S7 1.010 1.020 0.962

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-INT Athila Ty3-INT 102 0.25
Athila Ty3-RH Athila Ty3-RH 62 0.15

clusters with similarity:

Cluster Number of similarity hits
53 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
53 27 0.0808
122 11 0.234
132 4 0.0748
9 1 0.000472
19 1 0.000521
24 1 0.000825
56 1 0.00147
79 1 0.00449
80 1 0.00385
25300 1 0.0294

CL103 ----> CL53

image

No. of shared pairs: :27

CL103 ----> CL122

image

No. of shared pairs: :11