Cluster no. 23

Cluster no. 23

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Cluster is part of supercluster: 2

Cluster characteristics:

size	6543
size_real	6543
ecount	243380
supercluster	2
annotations_summary	10.35% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 2.37% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.43% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-RH 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness	0.552313167259787
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00122268072749503
satellite_probability	1.46614129999921e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2100
S9	2270
S7	2170

comparative analysis - number of edges between species:

	S8	S9	S7
S8	24400	26700	25800
S9	26700	29700	28500
S7	25800	28500	27200

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.996	1.000
S9	0.996	1.000	1.000
S7	1.000	1.000	0.998

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ale Ty1-INT Ale Ty1-INT 1 0.00015

Ivana Ty1-PROT Ivana Ty1-PROT 1 0.00015

TAR Ty1-RH TAR Ty1-RH 1 0.00015

CRM Ty3-GAG CRM Ty3-GAG 155 0.02369

Galadriel Ty3-GAG Galadriel Ty3-GAG 10 0.00153

Reina Ty3-GAG Reina Ty3-GAG 28 0.00428

Tekay Ty3-GAG Tekay Ty3-GAG 677 0.10347

CRM Ty3-INT CRM Ty3-INT 1 0.00015

TatV Ty3-INT TatV Ty3-INT 1 0.00015

Tekay Ty3-INT Tekay Ty3-INT 4 0.00061

Tekay Ty3-RH Tekay Ty3-RH 1 0.00015

TatV Ty3-RT TatV Ty3-RT 1 0.00015

Tekay Ty3-RT Tekay Ty3-RT 1 0.00015

clusters with similarity:

Cluster	Number of similarity hits

39	4760
22	1650
10	1250
12	56
15	9
17	7
28	7
164	4
4	1
6	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

39	717	0.409
10	336	0.187
22	132	0.0562
1	17	0.00467
164	17	0.0176
3	14	0.00354
7	12	0.00669
17	11	0.00606
12	10	0.00538
5	9	0.0025
6	9	0.0026
15	9	0.00449
16	8	0.00271
13	7	0.00218
2	6	0.00206
28	6	0.00412
4	5	0.00147
8	5	0.00207
11	5	0.00177
50	5	0.00427
58	5	0.00482
19	4	0.00141
21	4	0.00251
25	4	0.00296
29	4	0.00182
30	4	0.00256
46	4	0.00299
1310	4	0.00423
14	3	0.00167
24	3	0.00141
34	3	0.00245
37	3	0.00193
42	3	0.00237
47	3	0.00264
48	3	0.00167
63	3	0.00199
71	3	0.00251
3130	3	0.00317
9	2	0.00066
18	2	0.00104
20	2	0.000709
27	2	0.000834
31	2	0.00122
38	2	0.00111
44	2	0.00158
49	2	0.00116
55	2	0.00166
61	2	0.00139
65	2	0.00167
69	2	0.00176
78	2	0.00174
90	2	0.00184
91	2	0.00186
1230	2	0.00211
15000	2	0.00212
19700	2	0.00212
26	1	0.000372
33	1	0.000741
35	1	0.000533
36	1	0.000631
40	1	0.000673
41	1	0.000524
45	1	0.000823
53	1	0.000804
60	1	0.000791
62	1	0.000819
64	1	0.000786
66	1	0.000827
68	1	0.000853
70	1	0.000805
73	1	0.000817
74	1	0.000781
77	1	0.000978
86	1	0.000878
88	1	0.000995
92	1	0.000965
94	1	0.00103
100	1	0.00105
101	1	0.000956
105	1	0.001
109	1	0.00104
115	1	0.00102
129	1	0.001
151	1	0.00104
158	1	0.00104
187	1	0.00103
247	1	0.00104
347	1	0.00105
350	1	0.00104
364	1	0.00105
447	1	0.00105
502	1	0.00105
531	1	0.00105
632	1	0.00105
681	1	0.00105
969	1	0.00106
1450	1	0.00106
1490	1	0.00106
1740	1	0.00106
1880	1	0.00106
1900	1	0.00106
2000	1	0.00106
2370	1	0.00106
2660	1	0.00106
2800	1	0.00106
2820	1	0.00106
3150	1	0.00106
3260	1	0.00106
3520	1	0.00106
3570	1	0.00106
4110	1	0.00106
4360	1	0.00106
4550	1	0.00106
4570	1	0.00106
4680	1	0.00106
5580	1	0.00106
6540	1	0.00106
6680	1	0.00106
6800	1	0.00106
10500	1	0.00106
10900	1	0.00106
11400	1	0.00106
12400	1	0.00106
12800	1	0.00106
16200	1	0.00106
16400	1	0.00106
16700	1	0.00106
16800	1	0.00106
17200	1	0.00106
17800	1	0.00106
18800	1	0.00106
19800	1	0.00106
21200	1	0.00106
21500	1	0.00106
25900	1	0.00106

CL23 ----> CL39

No. of shared pairs: :717

CL23 ----> CL10

No. of shared pairs: :336

CL23 ----> CL22

No. of shared pairs: :132

CL23 ----> CL1

No. of shared pairs: :17

CL23 ----> CL164

No. of shared pairs: :17

CL23 ----> CL3

No. of shared pairs: :14

CL23 ----> CL7

No. of shared pairs: :12

CL23 ----> CL17

No. of shared pairs: :11

CL23 ----> CL12

No. of shared pairs: :10