Cluster no. 119

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Cluster is part of supercluster: 64

Cluster characteristics:

size 225
size_real 225
ecount 1004
supercluster 64
annotations_summary 42.67% Class_I/LINE:LINE-RT
pair_completeness 0.642335766423358
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00444444444444444
satellite_probability 4.28947468612038e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 78
S9 68
S7 79
comparative analysis - number of edges between species:
S8 S9 S7
S8 108.0 97.5 119
S9 97.5 117.0 93
S7 119.0 93.0 160
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.030 0.981 0.990
S9 0.981 1.240 0.816
S7 0.990 0.816 1.160

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 96 0.43

clusters connected through mates:

Cluster Number of shared
read pairs		 k
192 5 0.154
9 1 0.000473
12 1 0.00107
13 1 0.000437
939 1 0.0357
16200 1 0.0392
24500 1 0.0392