Cluster no. 85

Cluster no. 85

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Cluster is part of supercluster: 33

Cluster characteristics:

size	1033
size_real	1033
ecount	3838
supercluster	33
annotations_summary	0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG 0.10% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT 0.10% organelle/plastid
pair_completeness	0.790294627383016
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000968054211035818
satellite_probability	3.20953330666128e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	375
S9	310
S7	348

comparative analysis - number of edges between species:

	S8	S9	S7
S8	517	416	470
S9	416	360	380
S7	470	380	427

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.010	0.984	1.010
S9	0.984	1.030	0.987
S7	1.010	0.987	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 0.00097

Ikeros Ty1-PROT Ikeros Ty1-PROT 1 0.00097

Athila Ty3-GAG Athila Ty3-GAG 2 0.00194

clusters with similarity:

Cluster	Number of similarity hits

47

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

47	17	0.0675
452	9	0.128
696	6	0.0909
1540	3	0.0476
1560	3	0.0469
2850	3	0.0476
4370	3	0.0484
4660	3	0.0484
936	2	0.0312
1200	2	0.0317
2660	2	0.0317
4490	2	0.0323
5280	2	0.0323
9110	2	0.0325
21300	2	0.0325
1	1	0.000362
4	1	0.000397
50	1	0.00348
665	1	0.0153
3230	1	0.016
5220	1	0.0161
5880	1	0.0164
7720	1	0.0163
10300	1	0.0163
10400	1	0.0163
11100	1	0.0163
17800	1	0.0163
22800	1	0.0163
26000	1	0.0163

CL85 ----> CL47

No. of shared pairs: :17