Cluster no. 46

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Cluster is part of supercluster: 2

Cluster characteristics:

size	3894
size_real	3894
ecount	191351
supercluster	2
annotations_summary	70.90% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 4.29% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness	0.66268146883006
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000256805341551104
satellite_probability	3.15659983381055e-22
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1280
S9	1370
S7	1240

comparative analysis - number of edges between species:

	S8	S9	S7
S8	21000	22400	20000
S9	22400	24100	21400
S7	20000	21400	18800

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.997	1.000
S9	0.997	1.000	1.000
S7	1.000	1.000	0.993

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 167 0.04289

CRM Ty3-INT CRM Ty3-INT 1 0.00026

Reina Ty3-INT Reina Ty3-INT 4 0.00103

Tekay Ty3-INT Tekay Ty3-INT 2761 0.70904

chromo-unclass Ty3-INT chromo-unclass Ty3-INT 1 0.00026

Reina Ty3-RH Reina Ty3-RH 1 0.00026

TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 2 0.00051

Tekay Ty3-RH Tekay Ty3-RH 1 0.00026

clusters with similarity:

Cluster	Number of similarity hits

1	3790
10	2670
44	106
45	46
34	38
66	11

clusters connected through mates:

Cluster	Number of shared read pairs	k

10	340	0.273
1	330	0.107
66	18	0.0273
34	5	0.00739
23	4	0.00299
45	4	0.006
22	3	0.00166
2	2	0.000847
13	2	0.000753
7260	2	0.00504
16	1	0.000416
21	1	0.000955
29	1	0.000607
35	1	0.000754
36	1	0.000964
41	1	0.000735
44	1	0.0014
55	1	0.00152
62	1	0.00149
79	1	0.00171
218	1	0.00241
2240	1	0.00252
3340	1	0.00252
9400	1	0.00253
23800	1	0.00253

CL46 ----> CL10

No. of shared pairs: :340

CL46 ----> CL1

No. of shared pairs: :330

CL46 ----> CL66

No. of shared pairs: :18