Cluster no. 106

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Cluster is part of supercluster: 51

Cluster characteristics:

size 336
size_real 336
ecount 1943
supercluster 51
annotations_summary 100.00% organelle/plastid
pair_completeness 0.836065573770492
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00297619047619048
satellite_probability 1.1655040537334e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 102
S9 123
S7 111
comparative analysis - number of edges between species:
S8 S9 S7
S8 176 212 176
S9 212 257 242
S7 176 242 249
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.08 1.020 0.910
S9 1.02 0.988 0.992
S7 0.91 0.992 1.080

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 336 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
181 12 0.453
162 3 0.15
1760 2 0.118
7 1 0.00115
9 1 0.000476
189 1 0.05
2040 1 0.0625

CL106 ----> CL181

image

No. of shared pairs: :12