Cluster no. 128

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Cluster is part of supercluster: 73

Cluster characteristics:

size 177
size_real 177
ecount 676
supercluster 73
annotations_summary
pair_completeness 0.351145038167939
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0564971751412429
satellite_probability 1.02325312684131e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 63
S9 65
S7 49
comparative analysis - number of edges between species:
S8 S9 S7
S8 89.0 86.5 63.5
S9 86.5 77.0 78.5
S7 63.5 78.5 53.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.050 1.010 0.921
S9 1.010 0.889 1.120
S7 0.921 1.120 0.942

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
5 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1770 4 0.0879
486 3 0.0612
2390 3 0.0667
3280 3 0.0674
15 2 0.00181
1560 2 0.0444
6140 2 0.0455
9440 2 0.046
24800 2 0.046
1 1 0.000365
2 1 0.000498
5 1 0.000371
13 1 0.000434
18 1 0.00098
70 1 0.00292
74 1 0.00264
109 1 0.016
1820 1 0.0225
3840 1 0.0225
6140 1 0.0227
6520 1 0.0233
10200 1 0.023
11800 1 0.023
12200 1 0.023
14100 1 0.023
17700 1 0.023
22500 1 0.023