Cluster no. 31

Cluster no. 31

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Cluster is part of supercluster: 1

Cluster characteristics:

size	5923
size_real	5923
ecount	741302
supercluster	1
annotations_summary	0.10% organelle/plastid 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT 0.02% Class_I/LINE:LINE-RT 0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG 0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
pair_completeness	0.622295261572172
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.341212223535371
satellite_probability	1.47574530676795e-08
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1970
S9	1930
S7	2020

comparative analysis - number of edges between species:

	S8	S9	S7
S8	79600	77800	85800
S9	77800	75800	83500
S7	85800	83500	91800

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.998	1	1.000
S9	1.000	1	1.000
S7	1.000	1	0.998

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 6 0.00101

LINE LINE-RT LINE LINE-RT 1 0.00017

Tork Ty1-GAG Tork Ty1-GAG 1 0.00017

Ale Ty1-INT Ale Ty1-INT 1 0.00017

CRM Ty3-INT CRM Ty3-INT 1 0.00017

clusters with similarity:

Cluster	Number of similarity hits

27	5560
83	1330
43	964
68	498
49	209
32	65
93	16
11	2
59	1
390	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

27	291	0.136
83	283	0.282
43	234	0.172
68	62	0.0675
49	61	0.0413
59	19	0.0132
32	16	0.00728
390	7	0.01
1330	6	0.00865
705	5	0.00718
899	5	0.00719
928	5	0.00719
1	4	0.00118
13	4	0.00136
24	4	0.00214
72	4	0.00332
732	4	0.00576
1240	4	0.00577
2060	4	0.00578
11	3	0.00117
16	3	0.00111
48	3	0.00195
1050	3	0.00433
1970	3	0.00433
4860	3	0.00434
5120	3	0.00434
9	2	0.00072
18	2	0.0012
22	2	0.000954
23	2	0.00122
51	2	0.00209
61	2	0.00168
503	2	0.00288
1280	2	0.00288
1960	2	0.00289
3280	2	0.00289
5400	2	0.00289
6660	2	0.00289
8550	2	0.0029
10900	2	0.0029
15500	2	0.0029
22000	2	0.0029
23900	2	0.0029
25200	2	0.0029
2	1	0.000377
4	1	0.000317
5	1	0.000299
7	1	0.000649
12	1	0.000624
21	1	0.000745
25	1	0.00091
26	1	0.000411
29	1	0.000515
30	1	0.000765
36	1	0.000751
47	1	0.00114
53	1	0.00101
56	1	0.000749
57	1	0.00141
63	1	0.000797
67	1	0.00114
93	1	0.00113
97	1	0.00131
118	1	0.00143
122	1	0.00142
292	1	0.00142
327	1	0.00144
351	1	0.00142
578	1	0.00143
939	1	0.00144
1010	1	0.00144
1100	1	0.00145
1230	1	0.00144
1670	1	0.00145
2080	1	0.00145
2220	1	0.00145
2840	1	0.00145
2940	1	0.00145
3440	1	0.00145
3770	1	0.00145
3810	1	0.00145
4230	1	0.00145
5080	1	0.00145
5260	1	0.00145
6050	1	0.00145
6470	1	0.00145
7260	1	0.00145
8570	1	0.00145
8580	1	0.00145
8800	1	0.00145
11000	1	0.00145
13600	1	0.00145
14400	1	0.00145
15100	1	0.00145
17700	1	0.00145
17800	1	0.00145
19100	1	0.00145
19600	1	0.00145
20400	1	0.00145
20500	1	0.00145
22200	1	0.00145
22500	1	0.00145
23200	1	0.00145
23300	1	0.00145
24000	1	0.00145
24300	1	0.00145
24500	1	0.00145
24900	1	0.00145
25300	1	0.00145
25300	1	0.00145

CL31 ----> CL27

No. of shared pairs: :291

CL31 ----> CL83

No. of shared pairs: :283

CL31 ----> CL43

No. of shared pairs: :234

CL31 ----> CL68

No. of shared pairs: :62

CL31 ----> CL49

No. of shared pairs: :61

CL31 ----> CL59

No. of shared pairs: :19

CL31 ----> CL32

No. of shared pairs: :16