Cluster no. 26

Cluster no. 26

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6349
size_real	6349
ecount	454894
supercluster	1
annotations_summary	0.39% organelle/mitochondria 0.17% organelle/plastid 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness	0.290447154471545
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0326035596156875
satellite_probability	5.90726017608602e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2160
S9	2050
S7	2130

comparative analysis - number of edges between species:

	S8	S9	S7
S8	57100	50300	53700
S9	50300	44500	47600
S7	53700	47600	50300

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.998	1.000
S9	0.998	0.999	1.000
S7	1.000	1.000	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 25 0.00394

plastid plastid 11 0.00173

SIRE Ty1-RT SIRE Ty1-RT 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

9	21400
11	20200
56	16200
81	3160
52	1200
32	41
15	2
41	2
93	2
13	1
16	1
20	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

11	1340	0.369
9	1030	0.269
56	322	0.135
52	91	0.0326
81	87	0.0382
32	40	0.0123
20	24	0.00662
93	21	0.0108
15	10	0.00356
16	10	0.00266
4	9	0.00214
24	8	0.00274
1	7	0.00158
13	7	0.00175
41	7	0.00258
112	7	0.00389
19	5	0.00138
2	4	0.00108
63	3	0.0013
476	3	0.00171
1960	3	0.00172
3	2	0.00042
12	2	0.000752
21	2	0.000834
22	2	0.000634
48	2	0.00077
72	2	0.000885
159	2	0.00112
393	2	0.00114
455	2	0.00114
4350	2	0.00114
4850	2	0.00114
5870	2	0.00114
5960	2	0.00114
6950	2	0.00114
7300	2	0.00114
9660	2	0.00115
11600	2	0.00115
14400	2	0.00115
22200	2	0.00115
7	1	0.000385
8	1	0.000311
18	1	0.000367
23	1	0.000372
30	1	0.000423
31	1	0.000411
33	1	0.000465
36	1	0.000419
40	1	0.000437
49	1	0.000395
51	1	0.000497
54	1	0.00049
69	1	0.000515
73	1	0.000494
75	1	0.000499
77	1	0.000548
78	1	0.000513
86	1	0.000515
90	1	0.000529
101	1	0.000541
118	1	0.000569
130	1	0.000561
166	1	0.000565
251	1	0.000571
258	1	0.000569
350	1	0.000568
495	1	0.00057
507	1	0.000571
893	1	0.000572
1750	1	0.000572
2000	1	0.000572
2050	1	0.000572
3070	1	0.000572
3740	1	0.000573
5360	1	0.000572
5390	1	0.000572
5630	1	0.000572
5780	1	0.000572
6670	1	0.000572
6710	1	0.000572
6980	1	0.000573
8370	1	0.000573
10000	1	0.000573
17100	1	0.000573
19000	1	0.000573
21800	1	0.000573
24900	1	0.000573
25600	1	0.000573
25700	1	0.000573

CL26 ----> CL11

No. of shared pairs: :1338

CL26 ----> CL9

No. of shared pairs: :1032

CL26 ----> CL56

No. of shared pairs: :322

CL26 ----> CL52

No. of shared pairs: :91

CL26 ----> CL81

No. of shared pairs: :87

CL26 ----> CL32

No. of shared pairs: :40

CL26 ----> CL20

No. of shared pairs: :24

CL26 ----> CL93

No. of shared pairs: :21

CL26 ----> CL15

No. of shared pairs: :10

CL26 ----> CL16

No. of shared pairs: :10