Cluster no. 185

Go back to cluster table

Cluster is part of supercluster: 129

Cluster characteristics:

size 76
size_real 76
ecount 282
supercluster 129
annotations_summary 97.37% organelle/plastid
pair_completeness 0.652173913043478
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0131578947368421
satellite_probability 2.39038732047764e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 21
S9 28
S7 27
comparative analysis - number of edges between species:
S8 S9 S7
S8 15.0 33.5 28.0
S9 33.5 31.0 39.5
S7 28.0 39.5 34.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.723 1.190 1.020
S9 1.190 0.808 1.060
S7 1.020 1.060 0.931

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 74 0.97

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1060 9 0.692
1760 2 0.2
50 1 0.00426
178 1 0.0667
181 1 0.0513
195 1 0.0769