Cluster no. 14
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Cluster is part of supercluster: 2
Cluster characteristics:
| size |
7862 |
| size_real |
7862 |
| ecount |
516220 |
| supercluster |
2 |
| annotations_summary |
|
| pair_completeness |
0.642364737831627 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0417196642075808 |
| satellite_probability |
1.71598959185532e-19 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
2520 |
| S9 |
2700 |
| S7 |
2640 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
53700 |
57800 |
54800 |
| S9 |
57800 |
62200 |
59300 |
| S7 |
54800 |
59300 |
56300 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.000 |
1.000 |
0.998 |
| S9 |
1.000 |
0.998 |
1.000 |
| S7 |
0.998 |
1.000 |
1.000 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 12 |
3020 |
| 1 |
1560 |
| 30 |
1330 |
| 65 |
391 |
| 7 |
98 |
| 54 |
80 |
| 67 |
74 |
| 37 |
59 |
| 28 |
58 |
| 105 |
53 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 12 |
487 |
0.275 |
| 1 |
377 |
0.106 |
| 65 |
254 |
0.228 |
| 30 |
243 |
0.165 |
| 54 |
77 |
0.0669 |
| 105 |
52 |
0.0571 |
| 67 |
31 |
0.0296 |
| 28 |
17 |
0.0124 |
| 481 |
5 |
0.0058 |
| 7 |
4 |
0.00234 |
| 37 |
4 |
0.00273 |
| 848 |
4 |
0.00465 |
| 929 |
4 |
0.00464 |
| 2 |
3 |
0.00106 |
| 13 |
3 |
0.000962 |
| 16 |
3 |
0.00105 |
| 23 |
3 |
0.00167 |
| 6 |
2 |
0.000592 |
| 15 |
2 |
0.00104 |
| 12700 |
2 |
0.00233 |
| 19500 |
2 |
0.00233 |
| 4 |
1 |
0.000301 |
| 10 |
1 |
0.000586 |
| 17 |
1 |
0.000579 |
| 18 |
1 |
0.000545 |
| 19 |
1 |
0.000365 |
| 21 |
1 |
0.000663 |
| 22 |
1 |
0.000442 |
| 36 |
1 |
0.000667 |
| 38 |
1 |
0.000583 |
| 50 |
1 |
0.000924 |
| 60 |
1 |
0.00085 |
| 61 |
1 |
0.000739 |
| 62 |
1 |
0.000882 |
| 63 |
1 |
0.000704 |
| 69 |
1 |
0.000952 |
| 458 |
1 |
0.00116 |
| 2100 |
1 |
0.00117 |
| 4600 |
1 |
0.00117 |
| 6560 |
1 |
0.00117 |
| 7630 |
1 |
0.00117 |
| 7910 |
1 |
0.00117 |
| 12700 |
1 |
0.00117 |
| 13900 |
1 |
0.00117 |
| 17900 |
1 |
0.00117 |
| 18600 |
1 |
0.00117 |
| 20100 |
1 |
0.00117 |
| 20200 |
1 |
0.00117 |
| 20500 |
1 |
0.00117 |
|
CL14 ----> CL12
No. of shared pairs: :487
CL14 ----> CL1
No. of shared pairs: :377
CL14 ----> CL65
No. of shared pairs: :254
CL14 ----> CL30
No. of shared pairs: :243
CL14 ----> CL54
No. of shared pairs: :77
CL14 ----> CL105
No. of shared pairs: :52
CL14 ----> CL67
No. of shared pairs: :31
CL14 ----> CL28
No. of shared pairs: :17