Cluster no. 58

Go back to cluster table

Cluster is part of supercluster: 15

Cluster characteristics:

size 2294
size_real 2294
ecount 133202
supercluster 15
annotations_summary 0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
pair_completeness 0.848509266720387
pbs_score 0.0
TR_score 0.6933269117192125
TR_monomer_length 189.0
loop_index 0.864428945074106
satellite_probability 0.0687453655290121
consensus 
TCAAAACAACCCTTCTTTTTAATCCTACCCCTAATTCTCTAAATAGCCCTTACTTCCAACAATTACCCCTATTTTTTAAC
TACTGTGAAGGGTTGGTTTTTGCAGCACCCAATCCAAATGATTCATCATCTTTCATATTTGTCGATCTACCCCTACTATG
CTTAAACTACCCCTACTTCTCTTAATACT

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    787
  

  

    S9
    779
  

  

    S7
    728
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S9
    S7
  

   

    S8
    15500
    14900
    15000
  

  

    S9
    14900
    14200
    14400
  

  

    S7
    15000
    14400
    14800
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S9
    S7
  

   

    S8
    1.000
    1.000
    0.996
  

  

    S9
    1.000
    1.000
    0.997
  

  

    S7
    0.996
    0.997
    1.010
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
TatV Ty3-INT

TatV

Ty3-INT

1

0.00044


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    1
    2
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    1
    8
    0.00286
  

  

    23
    5
    0.00482
  

  

    12
    3
    0.00298
  

  

    22
    3
    0.002
  

  

    50
    3
    0.00936
  

  

    2
    2
    0.000971
  

  

    13
    2
    0.000849
  

  

    16
    2
    0.000952
  

  

    24
    2
    0.00157
  

  

    27
    2
    0.00129
  

  

    28
    2
    0.0033
  

  

    92
    2
    0.0107
  

  

    9920
    2
    0.0211
  

  

    18300
    2
    0.0211
  

  

    21900
    2
    0.0211
  

  

    24300
    2
    0.0211
  

  

    11
    1
    0.000507
  

  

    44
    1
    0.00241
  

  

    53
    1
    0.00253
  

  

    54
    1
    0.00257
  

  

    62
    1
    0.00269
  

  

    90
    1
    0.0042
  

  

    209
    1
    0.00917
  

  

    296
    1
    0.0098
  

  

    381
    1
    0.00985
  

  

    444
    1
    0.00976
  

  

    578
    1
    0.00985
  

  

    703
    1
    0.0101
  

  

    23100
    1
    0.0105
  

  

    25200
    1
    0.0105