Cluster no. 57

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Cluster is part of supercluster: 14

Cluster characteristics:

size 2342
size_real 2342
ecount 49166
supercluster 14
annotations_summary 31.21% 45S_rDNA/25S_rDNA
19.00% 45S_rDNA/18S_rDNA
2.69% 45S_rDNA/5.8S_rDNA
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.969722455845248
pbs_score 12.293364
TR_score 0.777886680640737
TR_monomer_length 8188.0
loop_index 0.990606319385141
satellite_probability 0.993570974660544
consensus 
GTTGCGATCTCGGAAAAGTTTGGTTTTGGTTGGATTTCACCAGTTTTTCCGAAAACTGGCCAAATCTAGCTAGAACCATG
CTGAAATGTGGGCGATTACAGGAAAGTTTGATTTTCGCTAAATTTCACCGATATTTTCGAAAATTGGGCGGATCAGGCAG
AAACACTGGTGAAACGTGGCCGCTCATGGGAAAGTTCGGTTCTGGCGAGATTTCCCAGTTTTATTGAAAACTGGACGTAT
TAAGCAGAAACCATGCTGAAACATGGGCGATCACGGGAAAGTTTTGTGTTTGCAAGATTTAACCGATTTTTTGAAAATTG
GATGGATCAGGCGGAAATCAAGCTGTGCACCGATCGGAACAAAATTTGTTGCGTGGATTTTTCGACAAATTGGTACACCT
CGGTTTTTTGTCGGTTTGTTAACGATTCGAAAGGATCGTGTGAGAACCAAGTTGAACGTGGATCGATCAAGGAAAATGGG
TTGCTTGGTTTTTCGGATGAGAAAGGTTTTTCGTGCTTAGCGGATCATCCTGTTTATTTTTCTTGGACCTTTTCTACTAG
TTGATTTATTTCAACTTAGTGGGGATGGCTGAGAATTTGAATGGGTTGTGGTCGCAAGGCATGTGAGTGGTTATCGGTGT
ATTTACTCGTTGGGCTCCCTGCTTTGTTGCAGCCAACCAACGAAAAAGCACCATTATCGTACTTTTTGTTTGAAACATAA
CGTGCGAGCCCCTTTTGCCTTCTAATGATATCGAAATGGAATTTGTTGGTTTTACCTATGTTGTTGTTCTTCACCATGCC
ATGTGGCGATGGGGAGGATGACCAATGAGGCCACCTTCTACGATGATAATCAGCGATGTTGGAAAGCGCTTAAGATTATT
GGTTGTTGAGTGGTTTCAAAGTTTTATGGATGTGGTGCATCGATTTGGCTTTCAAGGACAGGTGCCTTGTTTGCATTAAA
TGTATTTCGATTTTGTCCGCTCTTTGTGAAAAGACATCGTACAATTGTGTCGTCATCTCTTATATTAAGAGTATGCTCGT
CATGTTGTCGGTGACTTAAAGGACTTTCTACCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCAT
GCATGTGTAAGTATTAACAAATTCAGACTGTGAAACTGCGAATGGCTCATTAAATCAGTTATAGTTTGTTTGATGGTACG
TGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATACGTGCAACAAAGCCCGACTTTTGGAAGGGACGCATTTATTAGA
TAAAAGGCTGACACGAGCTTTGCTCGATGCTTTGATGATTTCATTATAACTTGACCGATCGCATGGCCTTTGTGCCAGCG
ACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGAGGCCTACCATGGTAATGACGGGTGACGGAGAA
TTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAAT
CCTGACACGGGGAGGTAGTGACAATAAATAACAATATCGGGCTCTTAGAGTTTGGTAATTGGAATGAGTACAATCTAAAT
CCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGT
TGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGTTTGGTCGTCAGGTCCGCCTTTGACGAGCACCTGGCGTCCTGTCC
CTTTTGCCGATGTTACGAATCTGGCCTTAATTGGTTGGGTCGTGCCTTCGGCGCCGTTACTTTGAAGAAATTAGAGTGCT
CAAAGCAAGCCTACGCTTTGTATACGTTAGCATGGGATAACATTACAGGATTTCGATCCTATTGTGTTGGCCTTCGGGAT
CGGAGTAATGATTAAGAGGGACAGTTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACG
AACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCG
TCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCAACGGATGTTGCTTTTAGGACTCCGTTGGCACCTTTTGAGAAA
TCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGT
GGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCGGACATAGTAAGGATTGACAGACTGAGAGCTC
TTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACG
AGACCTCGGCCTGCTAACTAGCTACACGGAGTCATCCCTTCGTGGTCAGCTTCTTAGAGGGACTATGGCCGTTTAGGCCA
TGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAGCG
AGTCTATATCCTTTGTCGACAGACACGGGTAATCTTCGAAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGT
CTTCAACGAGGAATTCCTAGTAAACGCGAGTCATCAGCTCGCATTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC
GCTCCTACCGATTGAATGGTCCGGTGAAGTGTTTGGATGGTGGCGATAGAGGTGGTTCGCCGCCTGTGGCGTCGCGAGAA
GTCCACTGAACCTTATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTC
GAGTTCCTTTTCGAACAGTTGTGAAATTGTGCTCATACCCGACGAGTACTACGTGTTTGTGCTATTAGTGCATGCGTTGT
CTTGGCGGGTTCCCTTTTGCTGCCTTCGTGTTGCTTTATTTGAAGTGAAACGAAGAGCAGAAATAAGACACCGGCACAGT
TTGTGCCAAGGACAGTTATTGTTGGAGTGCATTGCCATCGTTTTGATGTGCTTTGTGCTATTCTAGCGAGCATCTGAATG
ACTCCTGGCAATGGATATCTTGGCTCTCGTGTCGATGAAGAACGTAGCGAAATGCGACACTTGGTGTGAATTGCAGAATC
CCGTGAACCATCGAGTCTTTGAATGCAAGTTGCGCACGAGGCCATTAGGTCGAGTGCACGTCTGTTTGGGCGTCATGTAT
AGCGTCATTCCAATCTCCCTCATGCGACGAGTGCATTTTGGGTTATGATGGATATGGAGAATGACCTTCCGTGCTTTAAT
TGTATGGTAGGTTTAAGTGATTGTCGTTGCCAGTTATATGCGAGGCGAATGGTGTGTCGAGTTAACGCACGATGTCTCTA
ATCGCGTCCATGAGACCTAGGCATGACTTAGCACTAGCTAAAACCGATTTCGATGTTTGCTTTCGTAGCAGGCTCGGACC
ATGACCTCAGATCAGACGGGGCGACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAGAAGAAACTTACGAAGATTCCC
TTAGTAACGGCGAGCGAATCGGGAAAAGCCCAGCTTGAAAATTAGGTGGCTTTGTCGCCTAAATTGTAGTCTGGAGAAGC
GTCATCAGCGACGGATCAGGCCTAGGTCCCTTGGAAAGGGGTGCCAGGGAGGGTGACAGCCCCGTCCGGCTTGAACCTTG
CTGCAACATGAGGCGCTGTCGATGAGTCGGGTTGTTTGGGAATGCAGCCCCAATTGGGTGGTAAATTTCGTCCAAGGCTA
AATAGCGGCGAGAGACCGATAGCTAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGTGC
TTGAAATTGTCAGGAGGGAAACGAATGGGGGTCGGCGATGCGTGCTGGTTTGATGTTGAACTACTCACATTTAGGGTAGC
TCAACCGCTTGGCTCGGCACGTGGATCGTTGCGGGCTGTGCTTGCGGGCCAAGCCTCGAGTGTTTGATTTGCTTGAGGTA
ACGTCGTCGGCGCAGTCGAGGATGCAGTGCACGCCTCAATGGCGCGTCCTTTGTGGCGCTCTTGTGCGCTCATAGCACCG
TCTAGCGGGCTCCCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCATGCAAATCGATGGGGTGTGAAA
ACTCGGAAGGTGCAAGGAAGCTGATGGGTGGGATCTCCTTTACGGAGTGCACCGCCGACCGATCTTGATCTTTTGTGAAG
GGTTCGAGTGGGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCTTGAGCGGGGCGAAGCCAGAGGAAACTCTG
GTGGAGGCTCGTAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTA
GTAGCTGGTTCCCTCCGAAGTTTCCCTTAGGATAGCTGGAGCTCGCGTGCGAGTTATATCAGGTAAAGCAAATGATTAGA
GGCATCAGGGGCGTAACACCCTTGACCTATTCTCAAACTTTAAATAGGTAGGACGGTGCGACTGCTTTGGTGAGCCGTGC
CATGGAATCGAGAGCTCTAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTAAGG
TGCCCAACTGCACGCTAACCTAGAACCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAA
ATTCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTTAAGCGTGCTACCCAC
ACTCGGCCATCGAGGCGGTTGCCATGCCTTGATGAGTAGGAGGGCGCGGTGGCTGCTGCAAAATCTAAGGCGTGAGCCTG
GGTGGAGCGGCCATTGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGGGAACTTTGAAGGCCGAAGAGGGGAAAG
GTTCCATGTGAACGGCACTTGCACATGGGTCAGCCGATCCTAAGGGACGGGGGAAACCCGTAAAAGAGCGCATTGATGCG
CGAGCTCCGAAAGGGAATCGGGTCAAAATTCCCGAGCCAGGACGTGGTGGTAGACGGCAACGTTAGGAAGTCTGGAGACG
CTGGCGGGGGCCTTGGGGAGAGTTATCTTTTCTGCTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGCGGTAGGGT
CAAGCGGTTGGAAGAGCACTGCACGTCGAGCGGTGTCCATTGCGCCCCCGGCGGTCCATGAAAATCCAGAGGACCGAGTG
CCTCCCACGCTTGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGCCAATGGAAGAATGTAGGCAA
GGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGTTGGGCTTGGGGGTCCTAACGCGAACC
CATTGGCTGTTGGCGGACTGCTAAAGCCGCTTTCGTGGCGATAGCGGGACGACGCGTGCCGGTTGGGAGACGGGTTAGGA
ATGGGACTTCCTTACGGGAGTTTCTAGCCACTTGCATCGAACAACCGACTCAGAACTGGTACGGACAAGGGGAATCCGAC
TGTTTAATTAAAACAAAGCATTGCGATGGTCCTTGCGGATGCTTACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCA
AAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATC
TAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAA
CGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGT
GTAGGATAAGTGGGAGTCGGTTTACCGGCGAAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGATACG
AAGGTGGGGCTCAGCCCCTCCTTTTGGTTCTAAGGTCCTTTTCAAGGATCGATTCGGGCGGAAGACAATGTCAGGTGGGG
AGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGT
AGAACAAAAGGGCAAAAGCTCGTTTGATTTTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTTTCGATCCTTT
AGAACTTCGAAATTTGAAGTTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAG
CGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACC
CACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATTGCGTTGCGATAG
TAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACATTTGGTCATCGCGCTTGGTCGAAAAACCAGTGGCGCGAAGC
TACCGTGTGTCGGATTATGACTGAACGCCTCTAAGTCAGAATCCAGGCTAGAGAAGCGGCGCTTAATCTCAATGACCTTG
TCCCGACCCACAGTAGGTGTGCGAAAGCATACCCATGGGCACATGCCGAAGGACTCGGCCCGCTCGACGTATTCGTCGTA
GGGTCTTCCTTAGATTGAAATTCCGTAAGGTCCATTGATTGAATCCTTTGCAGACGACTTAAATACACGATGGGGCATTG
TAAGTGGTAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCTTAGTCGCATAGATTACCCCCTCCCTCCCAACC
CACCATAAGGTGAGAAAAAAACACGAGGTTGAACACTTGAGGGTTGCCGTTTATTTAGTAAAAAGGGGCCGCTATCACCT
CGTGAAACGCGGGTTCGACCGCAAGTCCCATCATACTCTGGTACTTAAGATTAAATTATAGGCTGCCGAACTTGCGCTCC
GAAGGCGATGATGGAAATAACTGCGTCTATGATGTAAATAAAATACAACCAAGGATTTGTGTACCAGCATACCTCGGCCC
GAGCACACAAGATTCACGCTGGAACTTGGAACGTGAGACGTAATGAAATTTCCACTATAGCCGAGGTGCTTCGCACTAAG
GCGGCCACTTCGACGAAGGTTCGAAAAGTTCCCATACTCAGTTTGGGGAAGTTAGAAAGAAGAACGGCTTTTCAGTAGGT
GGAACGTGATCCGTTCAAAGACCGCAAGTTTTGTCGGAATCTTTTCGGTTGAACATGATCCGCGTCTAAACACTAAGTGC
CAAATTCCTTGGTGAGTAGCCACAGACAGAAAAATGGGACAATGAGTAATCCAATAGGTACATCGATCGACCGACCACCG
AAATATAATTCCGTGGACTTATAAGAAAAGCCCATTGTGCCTGGATTTTATATTGGAAGAGCGGACCAGGCGAAAAGCAA
GCTGTAACGTGCGCTGACACTGAAATCTAAGCCTATGGAATTTCAAACATTTACCCGTGAAATTTACGAAACCTCCGCGC
CGAAGGCTCAAACGCGATCGGTTGACCAGCTTTCTGGTAAAGAAGGTGTTCGAGTTAATGGTGTTCACGTGTGCGCATCG
GGCTTGGCACGCCTTGGATTTGGCAAAGTACCAGATTTGGCACTTGGCAAAGTGCCAGATTCGGAAAACACATGCGGATC
ACTCAAAAACCCAGTGACTACATGGTAAAACCACAAAAAAAAATGTGGTCGGATTTACCTACGTAGCAGAGACACTTTGG
ACTACCGGGGTCATATTAGGCTAAATTCCATATATTCCTATATTGGGGGGGGAGGGTGAGGAGGAGGAGGAAGGGGAAGG
ATTGACCAAAATGGATCAGGCAAAACGCAAGCTGAAACATTGGTCGATCAACAAATTTTTTTTGTGTGGATTTTTCGGAG
AAATTTTTTTTTTTTTTTAAATATTTAAAAAAAAAAAATTTAAAAAAAAAATTTTTTGAAAATGTTTTCGATGGAAGTGC
CCTCCCCAAATTTTTTAAAAATATTTTT

  

  

    TAREAN_annotation
    rDNA
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    829
  

  

    S9
    697
  

  

    S7
    816
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S9
    S7
  

   

    S8
    6570
    5280
    6120
  

  

    S9
    5280
    4260
    4960
  

  

    S7
    6120
    4960
    5640
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S9
    S7
  

   

    S8
    1.000
    0.997
    1.000
  

  

    S9
    0.997
    0.997
    1.010
  

  

    S7
    1.000
    1.010
    0.992
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
18S_rDNA 

18S_rDNA



445

0.19001


 

 
25S_rDNA 

25S_rDNA



731

0.31213


 

 
5.8S_rDNA 

5.8S_rDNA



 63

0.02690


 

 
Tekay Ty3-INT

Tekay

Ty3-INT

  1

0.00043


 

 
Athila Ty3-RT

Athila

Ty3-RT

  1

0.00043


 
	


 

 


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    15400
    2
    0.105
  

  

    7
    1
    0.00115
  

  

    18
    1
    0.001
  

  

    31
    1
    0.00141
  

  

    33
    1
    0.00236
  

  

    38
    1
    0.00114
  

  

    54
    1
    0.00319
  

  

    64
    1
    0.00288
  

  

    74
    1
    0.00282
  

  

    97
    1
    0.011