Cluster no. 135

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Cluster is part of supercluster: 80

Cluster characteristics:

size 147
size_real 147
ecount 530
supercluster 80
annotations_summary 100.00% organelle/plastid
2.04% Class_II/Subclass_1/TIR/PIF_Harbinger:Harbinger-TPase
pair_completeness 0.75
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00680272108843537
satellite_probability 7.54576282516466e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 42
S9 50
S7 55
comparative analysis - number of edges between species:
S8 S9 S7
S8 40.0 49 57.5
S9 49.0 63 72.0
S7 57.5 72 70.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.988 0.963 1.040
S9 0.963 0.986 1.040
S7 1.040 1.040 0.932

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 147 1.00
PIF_Harbinger Harbinger-TPase PIF_Harbinger Harbinger-TPase 3 0.02

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1330 6 0.414
167 2 0.129
908 2 0.133
22000 2 0.174
118 1 0.0476
161 1 0.0625
23800 1 0.087