Cluster no. 22
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Cluster is part of supercluster: 2
Cluster characteristics:
| size |
6610 |
| size_real |
6610 |
| ecount |
181101 |
| supercluster |
2 |
| annotations_summary |
4.49% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.08% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
|
| pair_completeness |
0.402801358234295 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00075642965204236 |
| satellite_probability |
6.52979343237575e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
2200 |
| S9 |
2150 |
| S7 |
2260 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
22000 |
20500 |
20700 |
| S9 |
20500 |
18900 |
19200 |
| S7 |
20700 |
19200 |
19600 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.000 |
1.000 |
0.996 |
| S9 |
1.000 |
0.999 |
0.998 |
| S7 |
0.996 |
0.998 |
1.010 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| EnSpm_CACTA CACTA-TPase
|
EnSpm_CACTA
|
CACTA-TPase
|
1
|
0.00015
|
| Ale Ty1-GAG
|
Ale
|
Ty1-GAG
|
1
|
0.00015
|
| Ale Ty1-INT
|
Ale
|
Ty1-INT
|
2
|
0.00030
|
| SIRE Ty1-INT
|
SIRE
|
Ty1-INT
|
1
|
0.00015
|
| Tork Ty1-RT
|
Tork
|
Ty1-RT
|
1
|
0.00015
|
| CRM Ty3-GAG
|
CRM
|
Ty3-GAG
|
5
|
0.00076
|
| Galadriel Ty3-GAG
|
Galadriel
|
Ty3-GAG
|
2
|
0.00030
|
| Reina Ty3-GAG
|
Reina
|
Ty3-GAG
|
4
|
0.00061
|
| Tekay Ty3-GAG
|
Tekay
|
Ty3-GAG
|
297
|
0.04493
|
| Reina Ty3-INT
|
Reina
|
Ty3-INT
|
1
|
0.00015
|
| TatV Ty3-INT
|
TatV
|
Ty3-INT
|
1
|
0.00015
|
| Tekay Ty3-INT
|
Tekay
|
Ty3-INT
|
3
|
0.00045
|
| Tekay Ty3-RH
|
Tekay
|
Ty3-RH
|
1
|
0.00015
|
| Athila Ty3-RT
|
Athila
|
Ty3-RT
|
1
|
0.00015
|
| Tekay Ty3-RT
|
Tekay
|
Ty3-RT
|
2
|
0.00030
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 17 |
2300 |
| 23 |
1650 |
| 42 |
887 |
| 28 |
624 |
| 30 |
608 |
| 12 |
454 |
| 10 |
156 |
| 1 |
73 |
| 15 |
57 |
| 34 |
28 |
| 76 |
3 |
| 164 |
2 |
| 6 |
1 |
| 74 |
1 |
| 79 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 17 |
497 |
0.218 |
| 15 |
190 |
0.077 |
| 10 |
186 |
0.0824 |
| 28 |
181 |
0.0943 |
| 30 |
169 |
0.0835 |
| 42 |
157 |
0.0907 |
| 23 |
132 |
0.0562 |
| 1 |
118 |
0.0287 |
| 12 |
40 |
0.0172 |
| 76 |
38 |
0.0232 |
| 34 |
20 |
0.0118 |
| 16 |
17 |
0.00498 |
| 253 |
13 |
0.00915 |
| 6 |
12 |
0.00305 |
| 29 |
12 |
0.00451 |
| 13 |
11 |
0.003 |
| 2 |
10 |
0.00297 |
| 24 |
10 |
0.00387 |
| 37 |
10 |
0.00496 |
| 4 |
8 |
0.00207 |
| 5 |
8 |
0.00197 |
| 8 |
8 |
0.00278 |
| 25 |
7 |
0.00385 |
| 36 |
7 |
0.00342 |
| 11 |
6 |
0.00183 |
| 55 |
6 |
0.00359 |
| 610 |
6 |
0.00424 |
| 3 |
5 |
0.00113 |
| 41 |
4 |
0.00169 |
| 54 |
4 |
0.00235 |
| 63 |
4 |
0.00203 |
| 1510 |
4 |
0.00284 |
| 18 |
3 |
0.00126 |
| 33 |
3 |
0.00166 |
| 44 |
3 |
0.00174 |
| 45 |
3 |
0.00179 |
| 46 |
3 |
0.00166 |
| 58 |
3 |
0.002 |
| 59 |
3 |
0.00139 |
| 61 |
3 |
0.00157 |
| 1770 |
3 |
0.00213 |
| 1920 |
3 |
0.00213 |
| 2460 |
3 |
0.00213 |
| 4050 |
3 |
0.00213 |
| 7 |
2 |
0.000886 |
| 19 |
2 |
0.000607 |
| 20 |
2 |
0.000609 |
| 21 |
2 |
0.000971 |
| 26 |
2 |
0.000634 |
| 27 |
2 |
0.000699 |
| 31 |
2 |
0.000954 |
| 32 |
2 |
0.000686 |
| 35 |
2 |
0.000855 |
| 39 |
2 |
0.000903 |
| 47 |
2 |
0.00125 |
| 48 |
2 |
0.000886 |
| 51 |
2 |
0.0012 |
| 53 |
2 |
0.00117 |
| 60 |
2 |
0.00116 |
| 64 |
2 |
0.00115 |
| 65 |
2 |
0.0012 |
| 66 |
2 |
0.0012 |
| 73 |
2 |
0.00119 |
| 74 |
2 |
0.00115 |
| 83 |
2 |
0.00116 |
| 111 |
2 |
0.00137 |
| 3660 |
2 |
0.00142 |
| 3710 |
2 |
0.00142 |
| 5030 |
2 |
0.00142 |
| 9770 |
2 |
0.00142 |
| 10800 |
2 |
0.00142 |
| 11400 |
2 |
0.00142 |
| 11800 |
2 |
0.00142 |
| 17800 |
2 |
0.00142 |
| 20300 |
2 |
0.00142 |
| 20500 |
2 |
0.00142 |
| 23100 |
2 |
0.00142 |
| 25700 |
2 |
0.00142 |
| 9 |
1 |
0.000286 |
| 14 |
1 |
0.000442 |
| 38 |
1 |
0.000442 |
| 40 |
1 |
0.000513 |
| 67 |
1 |
0.000626 |
| 69 |
1 |
0.000624 |
| 75 |
1 |
0.000601 |
| 77 |
1 |
0.000673 |
| 78 |
1 |
0.000621 |
| 79 |
1 |
0.000626 |
| 80 |
1 |
0.000612 |
| 84 |
1 |
0.000611 |
| 89 |
1 |
0.000675 |
| 90 |
1 |
0.000645 |
| 92 |
1 |
0.000667 |
| 93 |
1 |
0.000624 |
| 94 |
1 |
0.000697 |
| 95 |
1 |
0.000674 |
| 98 |
1 |
0.000684 |
| 100 |
1 |
0.000705 |
| 112 |
1 |
0.000684 |
| 123 |
1 |
0.00069 |
| 126 |
1 |
0.00069 |
| 142 |
1 |
0.000693 |
| 149 |
1 |
0.000703 |
| 164 |
1 |
7e-04 |
| 190 |
1 |
0.000703 |
| 229 |
1 |
0.000702 |
| 261 |
1 |
0.000702 |
| 315 |
1 |
0.000706 |
| 371 |
1 |
0.000706 |
| 388 |
1 |
0.000705 |
| 400 |
1 |
0.000706 |
| 561 |
1 |
0.000708 |
| 601 |
1 |
0.000707 |
| 684 |
1 |
0.000708 |
| 799 |
1 |
0.000708 |
| 1260 |
1 |
0.00071 |
| 1350 |
1 |
0.000709 |
| 1680 |
1 |
0.000709 |
| 1740 |
1 |
0.000709 |
| 2050 |
1 |
0.00071 |
| 2100 |
1 |
0.00071 |
| 2260 |
1 |
0.000709 |
| 2300 |
1 |
0.000709 |
| 2500 |
1 |
0.000709 |
| 2510 |
1 |
0.000709 |
| 2740 |
1 |
0.000709 |
| 2780 |
1 |
0.000709 |
| 2850 |
1 |
0.000709 |
| 3340 |
1 |
0.00071 |
| 3440 |
1 |
0.00071 |
| 4740 |
1 |
0.00071 |
| 4900 |
1 |
0.00071 |
| 5400 |
1 |
0.00071 |
| 5900 |
1 |
0.00071 |
| 6580 |
1 |
0.00071 |
| 6760 |
1 |
0.00071 |
| 7120 |
1 |
0.00071 |
| 7990 |
1 |
0.00071 |
| 8060 |
1 |
0.00071 |
| 9370 |
1 |
0.00071 |
| 9780 |
1 |
0.00071 |
| 10300 |
1 |
0.00071 |
| 10400 |
1 |
0.00071 |
| 10600 |
1 |
0.00071 |
| 11700 |
1 |
0.00071 |
| 12500 |
1 |
0.00071 |
| 12600 |
1 |
0.00071 |
| 15100 |
1 |
0.00071 |
| 16700 |
1 |
0.00071 |
| 16800 |
1 |
0.00071 |
| 17200 |
1 |
0.00071 |
| 17500 |
1 |
0.00071 |
| 18700 |
1 |
0.00071 |
| 19200 |
1 |
0.00071 |
| 19400 |
1 |
0.00071 |
| 19700 |
1 |
0.00071 |
| 19900 |
1 |
0.00071 |
| 21500 |
1 |
0.00071 |
| 22400 |
1 |
0.00071 |
| 22600 |
1 |
0.00071 |
| 22900 |
1 |
0.00071 |
| 22900 |
1 |
0.00071 |
| 25400 |
1 |
0.00071 |
| 25400 |
1 |
0.00071 |
| 25500 |
1 |
0.00071 |
| 25800 |
1 |
0.00071 |
|
CL22 ----> CL17
No. of shared pairs: :497
CL22 ----> CL15
No. of shared pairs: :190
CL22 ----> CL10
No. of shared pairs: :186
CL22 ----> CL28
No. of shared pairs: :181
CL22 ----> CL30
No. of shared pairs: :169
CL22 ----> CL42
No. of shared pairs: :157
CL22 ----> CL23
No. of shared pairs: :132
CL22 ----> CL1
No. of shared pairs: :118
CL22 ----> CL12
No. of shared pairs: :40
CL22 ----> CL76
No. of shared pairs: :38
CL22 ----> CL34
No. of shared pairs: :20
CL22 ----> CL16
No. of shared pairs: :17
CL22 ----> CL253
No. of shared pairs: :13
CL22 ----> CL6
No. of shared pairs: :12
CL22 ----> CL29
No. of shared pairs: :12
CL22 ----> CL13
No. of shared pairs: :11
CL22 ----> CL2
No. of shared pairs: :10
CL22 ----> CL24
No. of shared pairs: :10
CL22 ----> CL37
No. of shared pairs: :10