Cluster no. 171

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Cluster is part of supercluster: 115

Cluster characteristics:

size 87
size_real 87
ecount 322
supercluster 115
annotations_summary 66.67% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
8.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
2.30% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.380952380952381
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0114942528735632
satellite_probability 1.1303462298218e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 24
S9 35
S7 28
comparative analysis - number of edges between species:
S8 S9 S7
S8 22.0 46.5 24.5
S9 46.5 69.0 35.0
S7 24.5 35.0 19.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.819 1.070 1.080
S9 1.070 0.981 0.954
S7 1.080 0.954 0.993

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-RH Ivana Ty1-RH 7 0.080
SIRE Ty1-RH SIRE Ty1-RH 58 0.667
SIRE Ty1-RT SIRE Ty1-RT 2 0.023

clusters connected through mates:

Cluster Number of shared
read pairs		 k
69 9 0.0421
654 8 0.302
1940 2 0.0889
1340 1 0.0444
5890 1 0.0476
7240 1 0.0476
19400 1 0.0488