Cluster no. 84

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Cluster is part of supercluster: 32

Cluster characteristics:

size 1036
size_real 1036
ecount 5332
supercluster 32
annotations_summary 0.10% organelle/plastid
pair_completeness 0.383177570093458
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000965250965250965
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 340
S9 340
S7 356
comparative analysis - number of edges between species:
S8 S9 S7
S8 543 554 592
S9 554 560 603
S7 592 603 731
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.01 1.020 0.970
S9 1.02 1.010 0.972
S7 0.97 0.972 1.050

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00097

clusters with similarity:

Cluster Number of similarity hits
35 8
74 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
35 14 0.012
301 10 0.0403
74 9 0.0158
2 6 0.00273
242 5 0.0195
3110 4 0.0172
1 3 0.00102
415 3 0.0124
1980 3 0.0129
61 2 0.00274
496 2 0.00837
2360 2 0.00857
3780 2 0.00858
3880 2 0.00858
4000 2 0.00858
4580 2 0.0086
5080 2 0.0086
7130 2 0.0086
7180 2 0.0086
7480 2 0.00862
9770 2 0.00862
10600 2 0.00862
13200 2 0.00862
15800 2 0.00862
18700 2 0.00862
23000 2 0.00862
9 1 0.000431
13 1 0.000401
16 1 0.000447
22 1 0.000611
24 1 0.000709
29 1 0.000674
70 1 0.00189
79 1 0.00238
518 1 0.00423
885 1 0.00426
1060 1 0.00427
1500 1 0.00426
2130 1 0.00429
2160 1 0.0043
2190 1 0.0043
3240 1 0.00429
3340 1 0.00431
3420 1 0.00429
4260 1 0.0043
4360 1 0.0043
5370 1 0.00432
5650 1 0.00432
6110 1 0.00432
7400 1 0.0043
9160 1 0.00431
10100 1 0.00431
10400 1 0.00431
10400 1 0.00431
10500 1 0.00431
10700 1 0.00431
11000 1 0.00431
11800 1 0.00431
12200 1 0.00431
12800 1 0.00431
13600 1 0.00431
19500 1 0.00431
19700 1 0.00431
19800 1 0.00431
20600 1 0.00431
20700 1 0.00431
21400 1 0.00431
21900 1 0.00431
22200 1 0.00431
22500 1 0.00431
24100 1 0.00431
24500 1 0.00431

CL84 ----> CL35

image

No. of shared pairs: :14

CL84 ----> CL301

image

No. of shared pairs: :10