Cluster no. 111

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Cluster is part of supercluster: 56

Cluster characteristics:

size	289
size_real	289
ecount	850
supercluster	56
annotations_summary	9.00% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG 5.19% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT 2.08% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT 1.04% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness	0.445
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.546712802768166
satellite_probability	0.000205974779055226
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	95
S9	89
S7	105

comparative analysis - number of edges between species:

	S8	S9	S7
S8	95.0	84.5	112
S9	84.5	75.0	87
S7	112.0	87.0	112

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.947	0.998	1.050
S9	0.998	1.050	0.963
S7	1.050	0.963	0.981

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tork Ty1-GAG Tork Ty1-GAG 26 0.090

Ale Ty1-PROT Ale Ty1-PROT 3 0.010

TAR Ty1-PROT TAR Ty1-PROT 6 0.021

Tork Ty1-PROT Tork Ty1-PROT 15 0.052

clusters connected through mates:

Cluster	Number of shared read pairs	k

121	7	0.0828
222	4	0.0556
2150	3	0.0513
3360	3	0.0522
1	2	0.000726
22	2	0.00137
1110	2	0.0345
1710	2	0.0342
5160	2	0.0351
6530	2	0.0351
10	1	0.0011
12	1	0.00103
13	1	0.000431
18	1	0.000968
50	1	0.00355
329	1	0.014
516	1	0.0153
776	1	0.0167
1120	1	0.0169
3160	1	0.0177
3820	1	0.0174
4000	1	0.0177
6700	1	0.0175
11100	1	0.0177
11500	1	0.0177
13000	1	0.0177
15400	1	0.0177
19100	1	0.0177
21300	1	0.0177
25600	1	0.0177