Cluster no. 60

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Cluster is part of supercluster: 16

Cluster characteristics:

size 2168
size_real 2168
ecount 20384
supercluster 16
annotations_summary 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% organelle/plastid
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
pair_completeness 0.544159544159544
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000461254612546125
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 687
S9 707
S7 774
comparative analysis - number of edges between species:
S8 S9 S7
S8 2120 2230 2230
S9 2230 2240 2350
S7 2230 2350 2400
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.997 1.010 0.991
S9 1.010 0.984 1.000
S7 0.991 1.000 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00046
Ale Ty1-INT Ale Ty1-INT 1 0.00046
Reina Ty3-INT Reina Ty3-INT 1 0.00046
CRM Ty3-RT CRM Ty3-RT 1 0.00046
Tekay Ty3-RT Tekay Ty3-RT 1 0.00046

clusters with similarity:

Cluster Number of similarity hits
18 1
25 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
70 18 0.0291
874 6 0.0185
18 5 0.00385
944 5 0.0154
1200 5 0.0154
24 4 0.00267
29 3 0.00191
1470 3 0.00927
1570 3 0.00927
2640 3 0.00933
4330 3 0.00933
6900 3 0.00933
1 2 0.000663
3 2 6e-04
4 2 0.000719
8 2 0.00112
15 2 0.00145
16 2 0.000859
17 2 0.00168
22 2 0.00116
64 2 0.00308
954 2 0.00618
2230 2 0.0062
4110 2 0.00621
6360 2 0.00622
9700 2 0.00623
10000 2 0.00623
10700 2 0.00623
11000 2 0.00623
13400 2 0.00623
17400 2 0.00623
18600 2 0.00623
21900 2 0.00623
22400 2 0.00623
23600 2 0.00623
25100 2 0.00623
7 1 0.000854
10 1 0.000854
12 1 0.00081
14 1 0.00085
19 1 0.000453
23 1 0.000791
25 1 0.00137
28 1 0.0012
32 1 0.000547
34 1 0.00166
35 1 0.000799
43 1 0.00101
47 1 0.00196
48 1 0.000854
49 1 0.000903
52 1 0.00073
55 1 0.00172
68 1 0.00182
69 1 0.00194
98 1 0.00267
123 1 0.00276
289 1 0.00304
474 1 0.00304
643 1 0.00306
911 1 0.00309
1140 1 0.00309
1430 1 0.00311
1580 1 0.00309
2070 1 0.0031
2360 1 0.0031
3330 1 0.00312
4200 1 0.00312
4910 1 0.00311
5380 1 0.00311
5830 1 0.00311
6210 1 0.00312
6460 1 0.00311
7220 1 0.00311
7930 1 0.00312
8640 1 0.00312
9320 1 0.00312
10400 1 0.00312
10800 1 0.00312
11200 1 0.00312
11600 1 0.00312
12000 1 0.00312
12500 1 0.00312
13500 1 0.00312
13600 1 0.00312
14400 1 0.00312
14500 1 0.00312
15100 1 0.00312
15500 1 0.00312
15500 1 0.00312
16100 1 0.00312
16600 1 0.00312
17200 1 0.00312
21000 1 0.00312
22600 1 0.00312
24700 1 0.00312
25300 1 0.00312

CL60 ----> CL70

image

No. of shared pairs: :18