Cluster no. 107

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Cluster is part of supercluster: 52

Cluster characteristics:

size 312
size_real 312
ecount 1592
supercluster 52
annotations_summary 0.32% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.322033898305085
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00320512820512821
satellite_probability 1.08737944923628e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 106
S9 107
S7 99
comparative analysis - number of edges between species:
S8 S9 S7
S8 172 180 172
S9 180 185 181
S7 172 181 170
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.999 1.000 0.998
S9 1.000 0.988 1.010
S7 0.998 1.010 0.991

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-RT Tekay Ty3-RT 1 0.0032

clusters connected through mates:

Cluster Number of shared
read pairs		 k
676 4 0.046
521 3 0.0347
1730 3 0.0361
2360 3 0.0368
4250 3 0.0368
5590 3 0.0368
6130 3 0.0368
2200 2 0.0245
4470 2 0.0245
6330 2 0.0245
22300 2 0.0247
16 1 0.000479
78 1 0.00353
104 1 0.00517
529 1 0.0117
1010 1 0.0118
2400 1 0.0121
2410 1 0.0121
2730 1 0.0123
4930 1 0.0123
5860 1 0.0123
7250 1 0.0123
7290 1 0.0123
7600 1 0.0123
8790 1 0.0123
8940 1 0.0123
12400 1 0.0123
12500 1 0.0123
14300 1 0.0123
15600 1 0.0123
15800 1 0.0123
16200 1 0.0123
19600 1 0.0123
21500 1 0.0123
24100 1 0.0123
25200 1 0.0123