Cluster no. 99

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Cluster is part of supercluster: 45

Cluster characteristics:

size 447
size_real 447
ecount 1999
supercluster 45
annotations_summary 20.36% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
14.77% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
12.75% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
1.34% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
1.12% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.89% organelle/mitochondria
0.67% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
pair_completeness 0.719230769230769
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00223713646532438
satellite_probability 1.17014641654426e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 143
S9 154
S7 150
comparative analysis - number of edges between species:
S8 S9 S7
S8 214 238 223
S9 238 236 208
S7 223 208 210
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.939 1.030 1.030
S9 1.030 1.010 0.952
S7 1.030 0.952 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 4 0.0089
Ale Ty1-INT Ale Ty1-INT 1 0.0022
Angela Ty1-INT Angela Ty1-INT 3 0.0067
Ikeros Ty1-INT Ikeros Ty1-INT 5 0.0112
Ivana Ty1-INT Ivana Ty1-INT 1 0.0022
TAR Ty1-INT TAR Ty1-INT 66 0.1477
TAR Ty1-PROT TAR Ty1-PROT 6 0.0134
Ivana Ty1-RH Ivana Ty1-RH 1 0.0022
TAR Ty1-RH TAR Ty1-RH 57 0.1275
TAR Ty1-RT TAR Ty1-RT 91 0.2036

clusters connected through mates:

Cluster Number of shared
read pairs		 k
202 7 0.143
1 1 0.000366
7 1 0.00113
13 1 0.000435
21 1 0.00145
24 1 0.000822
36 1 0.00147
92 1 0.00775
3700 1 0.0267
5490 1 0.027
17500 1 0.0267