Cluster no. 169

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Cluster is part of supercluster: 113

Cluster characteristics:

size 90
size_real 90
ecount 230
supercluster 113
annotations_summary 74.44% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
3.33% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
2.22% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
1.11% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
pair_completeness 0.428571428571429
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0111111111111111
satellite_probability 1.0041894271145e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 34
S9 29
S7 27
comparative analysis - number of edges between species:
S8 S9 S7
S8 31.0 27.0 26.5
S9 27.0 21.0 27.5
S7 26.5 27.5 16.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.999 0.973 1.030
S9 0.973 0.847 1.200
S7 1.030 1.200 0.751

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Bryco Ty1-INT Bryco Ty1-INT 2 0.022
Gymco-II Ty1-INT Gymco-II Ty1-INT 1 0.011
Tork Ty1-INT Tork Ty1-INT 67 0.744
Tork Ty1-PROT Tork Ty1-PROT 3 0.033

clusters connected through mates:

Cluster Number of shared
read pairs		 k
109 7 0.184
785 6 0.279
863 2 0.0909
6740 2 0.103
24400 2 0.105
8 1 0.000671
16 1 0.000494
69 1 0.00471
1960 1 0.0476