Cluster no. 66

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Cluster is part of supercluster: 19

Cluster characteristics:

size	1699
size_real	1699
ecount	9709
supercluster	19
annotations_summary	51.74% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 16.66% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 9.54% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.77% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-INT 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT 0.06% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
pair_completeness	0.523766816143498
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000588581518540318
satellite_probability	2.0897667525813e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	541
S9	600
S7	558

comparative analysis - number of edges between species:

	S8	S9	S7
S8	963	1110	985
S9	1110	1280	1130
S7	985	1130	1000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.997	1.000	1.000
S9	1.000	0.999	1.000
S7	1.000	1.000	0.999

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Tekay Ty3-CHDII Tekay Ty3-CHDII 162 0.09535

Chlamyvir Ty3-INT Chlamyvir Ty3-INT 1 0.00059

Reina Ty3-INT Reina Ty3-INT 1 0.00059

Tekay Ty3-INT Tekay Ty3-INT 879 0.51736

Galadriel Ty3-RH Galadriel Ty3-RH 1 0.00059

Reina Ty3-RH Reina Ty3-RH 13 0.00765

Tekay Ty3-RH Tekay Ty3-RH 283 0.16657

clusters with similarity:

Cluster	Number of similarity hits

1	51
10	38
46	11
34	7
45	2

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	111	0.0374
10	76	0.0681
46	18	0.0273
12	4	0.00339
76	3	0.00608
1400	3	0.0111
13	2	0.000791
18	2	0.00161
21	2	0.00218
22	2	0.0012
36	2	0.0022
63	2	0.00241
2	1	0.000448
3	1	0.000305
6	1	0.000359
15	1	0.000754
16	1	0.00044
23	1	0.000827
24	1	0.000692
27	1	0.000582
29	1	0.000659
33	1	0.00149
44	1	0.00171
56	1	0.0011
64	1	0.00168
179	1	0.00351
200	1	0.00347
2240	1	0.00375
2370	1	0.00375
2730	1	0.00375
3060	1	0.00374
7270	1	0.00375
10200	1	0.00375
13600	1	0.00375
18300	1	0.00375
19600	1	0.00375
19900	1	0.00375
20000	1	0.00375
20200	1	0.00375
21000	1	0.00375
25400	1	0.00375
25400	1	0.00375
25600	1	0.00375

CL66 ----> CL1

No. of shared pairs: :111

CL66 ----> CL10

No. of shared pairs: :76

CL66 ----> CL46

No. of shared pairs: :18