Cluster no. 37
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Cluster is part of supercluster: 2
Cluster characteristics:
| size |
5318 |
| size_real |
5318 |
| ecount |
73340 |
| supercluster |
2 |
| annotations_summary |
|
| pair_completeness |
0.626797185683695 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0586686724332456 |
| satellite_probability |
2.03030651973146e-18 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
1800 |
| S9 |
1750 |
| S7 |
1770 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
8010 |
7840 |
8280 |
| S9 |
7840 |
7790 |
8250 |
| S7 |
8280 |
8250 |
8790 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
1.010 |
0.997 |
0.994 |
| S9 |
0.997 |
1.000 |
1.000 |
| S7 |
0.994 |
1.000 |
1.010 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 17 |
1860 |
| 30 |
654 |
| 14 |
59 |
| 28 |
35 |
| 1 |
17 |
| 75 |
16 |
| 90 |
16 |
| 71 |
15 |
| 54 |
14 |
| 79 |
8 |
| 38 |
7 |
| 67 |
7 |
| 61 |
4 |
| 7 |
1 |
| 29 |
1 |
| 140 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 17 |
284 |
0.192 |
| 30 |
141 |
0.115 |
| 71 |
123 |
0.143 |
| 1 |
70 |
0.0212 |
| 28 |
40 |
0.0357 |
| 75 |
35 |
0.0403 |
| 90 |
29 |
0.0385 |
| 79 |
19 |
0.0238 |
| 22 |
10 |
0.00496 |
| 61 |
10 |
0.00903 |
| 321 |
10 |
0.0162 |
| 38 |
9 |
0.00613 |
| 7 |
7 |
0.00479 |
| 16 |
7 |
0.00267 |
| 67 |
6 |
0.00749 |
| 1060 |
6 |
0.00977 |
| 39 |
5 |
0.00352 |
| 51 |
5 |
0.0057 |
| 281 |
5 |
0.0081 |
| 12 |
4 |
0.00262 |
| 14 |
4 |
0.00273 |
| 24 |
4 |
0.00224 |
| 253 |
4 |
0.00641 |
| 604 |
4 |
0.0065 |
| 840 |
4 |
0.0065 |
| 938 |
4 |
0.00651 |
| 1390 |
4 |
0.00651 |
| 1460 |
4 |
0.00653 |
| 13 |
3 |
0.00104 |
| 23 |
3 |
0.00193 |
| 29 |
3 |
0.00161 |
| 54 |
3 |
0.00331 |
| 140 |
3 |
0.00469 |
| 542 |
3 |
0.00486 |
| 639 |
3 |
0.00487 |
| 1050 |
3 |
0.00489 |
| 2020 |
3 |
0.00489 |
| 2040 |
3 |
0.00489 |
| 3920 |
3 |
0.0049 |
| 4230 |
3 |
0.00491 |
| 2 |
2 |
0.000777 |
| 9 |
2 |
0.000741 |
| 18 |
2 |
0.00126 |
| 21 |
2 |
0.00158 |
| 36 |
2 |
0.0016 |
| 127 |
2 |
0.00306 |
| 553 |
2 |
0.00324 |
| 1040 |
2 |
0.00327 |
| 1380 |
2 |
0.00326 |
| 1620 |
2 |
0.00327 |
| 1980 |
2 |
0.00327 |
| 2750 |
2 |
0.00327 |
| 6360 |
2 |
0.00327 |
| 7460 |
2 |
0.00327 |
| 15100 |
2 |
0.00327 |
| 20700 |
2 |
0.00327 |
| 21900 |
2 |
0.00327 |
| 25300 |
2 |
0.00327 |
| 3 |
1 |
0.000276 |
| 4 |
1 |
0.000326 |
| 6 |
1 |
0.000319 |
| 15 |
1 |
0.000598 |
| 20 |
1 |
0.000402 |
| 43 |
1 |
0.00078 |
| 55 |
1 |
0.00115 |
| 63 |
1 |
0.000851 |
| 70 |
1 |
0.0011 |
| 78 |
1 |
0.00123 |
| 89 |
1 |
0.00146 |
| 92 |
1 |
0.00142 |
| 129 |
1 |
0.00151 |
| 335 |
1 |
0.00162 |
| 505 |
1 |
0.00161 |
| 621 |
1 |
0.00164 |
| 1140 |
1 |
0.00163 |
| 1410 |
1 |
0.00163 |
| 1710 |
1 |
0.00163 |
| 1760 |
1 |
0.00163 |
| 1790 |
1 |
0.00163 |
| 3000 |
1 |
0.00164 |
| 3830 |
1 |
0.00163 |
| 4610 |
1 |
0.00164 |
| 4670 |
1 |
0.00164 |
| 5230 |
1 |
0.00164 |
| 5510 |
1 |
0.00164 |
| 5520 |
1 |
0.00164 |
| 5660 |
1 |
0.00164 |
| 5780 |
1 |
0.00164 |
| 6200 |
1 |
0.00164 |
| 6930 |
1 |
0.00164 |
| 7330 |
1 |
0.00164 |
| 8060 |
1 |
0.00164 |
| 8620 |
1 |
0.00164 |
| 11800 |
1 |
0.00164 |
| 12000 |
1 |
0.00164 |
| 12800 |
1 |
0.00164 |
| 14800 |
1 |
0.00164 |
| 16700 |
1 |
0.00164 |
| 16800 |
1 |
0.00164 |
| 18200 |
1 |
0.00164 |
| 18400 |
1 |
0.00164 |
| 19300 |
1 |
0.00164 |
| 19300 |
1 |
0.00164 |
| 21200 |
1 |
0.00164 |
| 23500 |
1 |
0.00164 |
| 23500 |
1 |
0.00164 |
| 25000 |
1 |
0.00164 |
| 25500 |
1 |
0.00164 |
| 25800 |
1 |
0.00164 |
|
CL37 ----> CL17
No. of shared pairs: :284
CL37 ----> CL30
No. of shared pairs: :141
CL37 ----> CL71
No. of shared pairs: :123
CL37 ----> CL1
No. of shared pairs: :70
CL37 ----> CL28
No. of shared pairs: :40
CL37 ----> CL75
No. of shared pairs: :35
CL37 ----> CL90
No. of shared pairs: :29
CL37 ----> CL79
No. of shared pairs: :19
CL37 ----> CL22
No. of shared pairs: :10
CL37 ----> CL61
No. of shared pairs: :10
CL37 ----> CL321
No. of shared pairs: :10