Cluster no. 163

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Cluster is part of supercluster: 107

Cluster characteristics:

size 97
size_real 97
ecount 287
supercluster 107
annotations_summary 18.56% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
12.37% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
5.15% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
pair_completeness 0.53968253968254
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0103092783505155
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 39
S9 33
S7 25
comparative analysis - number of edges between species:
S8 S9 S7
S8 35.0 43 30.5
S9 43.0 28 30.0
S7 30.5 30 17.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.853 1.130 1.040
S9 1.130 0.788 1.100
S7 1.040 1.100 0.812

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-GAG Ale Ty1-GAG 18 0.186
Ale Ty1-RH Ale Ty1-RH 12 0.124
Ivana Ty1-RH Ivana Ty1-RH 5 0.052

clusters connected through mates:

Cluster Number of shared
read pairs		 k
558 7 0.35
946 5 0.278
12 1 0.00108
121 1 0.023
8790 1 0.0645
10800 1 0.0645
21500 1 0.0645