Cluster no. 130

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Cluster is part of supercluster: 75

Cluster characteristics:

size 171
size_real 171
ecount 478
supercluster 75
annotations_summary 0.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
pair_completeness 0.413223140495868
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00584795321637427
satellite_probability 1.06251818752296e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 52
S9 59
S7 60
comparative analysis - number of edges between species:
S8 S9 S7
S8 39 46.0 51.0
S9 46 45.0 68.5
S7 51 68.5 63.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.010 1.010 0.982
S9 1.010 0.846 1.120
S7 0.982 1.120 0.904

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-RT TatV Ty3-RT 1 0.0058

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3900 3 0.08
25 2 0.00449
957 2 0.05
4170 2 0.0533
1 1 0.000366
4 1 4e-04
9 1 0.000471
18 1 0.000987
26 1 0.000561
52 1 0.000922
55 1 0.00335
779 1 0.0238
1370 1 0.026
1800 1 0.0267
2090 1 0.026
4420 1 0.0278
5040 1 0.0278
19100 1 0.0274
24800 1 0.0274
24900 1 0.0274