Cluster no. 118

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Cluster is part of supercluster: 63

Cluster characteristics:

size 231
size_real 231
ecount 1546
supercluster 63
annotations_summary 100.00% organelle/plastid
0.43% Class_I/LINE:LINE-RT
pair_completeness 0.833333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00432900432900433
satellite_probability 1.43574013326601e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 79
S9 87
S7 65
comparative analysis - number of edges between species:
S8 S9 S7
S8 224 192 160
S9 192 183 157
S7 160 157 120
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.040 0.968 0.984
S9 0.968 1.000 1.040
S7 0.984 1.040 0.969

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 231 1.0000
LINE LINE-RT LINE LINE-RT 1 0.0043

clusters connected through mates:

Cluster Number of shared
read pairs		 k
117 8 0.421
174 4 0.235
26 1 0.000569
31 1 0.00143
135 1 0.0476