Cluster no. 96

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Cluster is part of supercluster: 42

Cluster characteristics:

size 541
size_real 541
ecount 3590
supercluster 42
annotations_summary 99.45% organelle/plastid
pair_completeness 0.86551724137931
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00184842883548983
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 178
S9 210
S7 153
comparative analysis - number of edges between species:
S8 S9 S7
S8 368 459 337
S9 459 517 391
S7 337 391 331
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.975 1.040 0.981
S9 1.040 0.993 0.970
S7 0.981 0.970 1.060

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 538 0.99

clusters connected through mates:

Cluster Number of shared
read pairs		 k
124 11 0.367
590 4 0.163
372 3 0.128
12 1 0.00107
20 1 0.000527
137 1 0.0299
275 1 0.0385
338 1 0.0392
477 1 0.04
634 1 0.04
717 1 0.0408

CL96 ----> CL124

image

No. of shared pairs: :11