Cluster no. 142

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Cluster is part of supercluster: 87

Cluster characteristics:

size 132
size_real 132
ecount 394
supercluster 87
annotations_summary
pair_completeness 0.281553398058252
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00757575757575758
satellite_probability 1.14058372808344e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 39
S9 52
S7 41
comparative analysis - number of edges between species:
S8 S9 S7
S8 36.0 41.0 32.5
S9 41.0 46.0 56.5
S7 32.5 56.5 52.0
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.180 1.03 0.829
S9 1.030 0.88 1.100
S7 0.829 1.10 1.030

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
8 24 0.0159
38 4 0.00447
736 3 0.0682
1870 2 0.05
20500 2 0.0526
22 1 0.000693
3840 1 0.0256
13600 1 0.0263
13800 1 0.0263
14400 1 0.0263
17900 1 0.0263
23200 1 0.0263
24400 1 0.0263
26100 1 0.0263

CL142 ----> CL8

image

No. of shared pairs: :24