Cluster no. 51

Cluster no. 51

Go back to cluster table

Cluster is part of supercluster: 2

Cluster characteristics:

size	2605
size_real	2605
ecount	62883
supercluster	2
annotations_summary	0.04% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
pair_completeness	0.660293180369662
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.018042226487524
satellite_probability	2.51712823533368e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	833
S9	857
S7	915

comparative analysis - number of edges between species:

	S8	S9	S7
S8	6580	6640	7160
S9	6640	6760	7140
S7	7160	7140	7670

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.996	0.997	1.010
S9	0.997	1.010	0.995
S7	1.010	0.995	0.999

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TAR Ty1-INT TAR Ty1-INT 1 0.00038

clusters with similarity:

Cluster	Number of similarity hits

17	559
1	293
28	88
65	15

clusters connected through mates:

Cluster	Number of shared read pairs	k

17	271	0.238
1	154	0.0519
28	35	0.045
65	7	0.0134
37	5	0.0057
18	3	0.00241
2	2	0.000896
22	2	0.0012
31	2	0.00209
12800	2	0.00748
5	1	0.000342
13	1	0.000395
16	1	0.00044
24	1	0.000692
26	1	0.000497
41	1	0.000812
44	1	0.0017
47	1	0.00218
54	1	0.00178
61	1	0.00131
82	1	0.00293
90	1	0.00244
91	1	0.00252
200	1	0.00345
5000	1	0.00373
7550	1	0.00374

CL51 ----> CL17

No. of shared pairs: :271

CL51 ----> CL1

No. of shared pairs: :154

CL51 ----> CL28

No. of shared pairs: :35