Cluster no. 41

Cluster no. 41

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Cluster is part of supercluster: 1

Cluster characteristics:

size	4205
size_real	4205
ecount	85813
supercluster	1
annotations_summary	0.19% Class_I/LINE:LINE-RT 0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII 0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-CHDII 0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII 0.02% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness	0.370599739243807
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.311771700356718
satellite_probability	2.68353570075386e-09
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	1390
S9	1450
S7	1360

comparative analysis - number of edges between species:

	S8	S9	S7
S8	9830	9960	9270
S9	9960	10200	9360
S7	9270	9360	8630

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	0.997	1.000
S9	0.997	1.000	0.999
S7	1.000	0.999	0.997

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

LINE LINE-RT LINE LINE-RT 8 0.00190

Ale Ty1-INT Ale Ty1-INT 2 0.00048

SIRE Ty1-RH SIRE Ty1-RH 1 0.00024

Galadriel Ty3-CHDII Galadriel Ty3-CHDII 2 0.00048

Tcn1 Ty3-CHDII Tcn1 Ty3-CHDII 2 0.00048

Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00024

TatV Ty3-RH TatV Ty3-RH 1 0.00024

hAT hAT-TPase hAT hAT-TPase 1 0.00024

clusters with similarity:

Cluster	Number of similarity hits

20	2220
19	1460
6	1060
5	618
52	426
43	179
9	10
101	6
26	2
15	1
91	1
112	1
113	1
184	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

20	387	0.136
19	354	0.124
5	241	0.0666
6	160	0.0459
52	74	0.0367
9	61	0.02
101	33	0.0309
43	20	0.0122
15	19	0.00937
16	13	0.00437
113	13	0.013
184	13	0.0133
3	11	0.00277
13	11	0.00341
91	11	0.01
112	10	0.00981
1	8	0.00218
4	7	0.00204
26	7	0.00258
63	7	0.00458
180	6	0.00612
29	5	0.00225
818	5	0.00515
22	4	0.00169
165	4	0.00407
186	4	0.00408
2230	4	0.00413
3860	4	0.00413
2	3	0.00102
24	3	0.0014
53	3	0.00237
1130	3	0.0031
6180	3	0.0031
11	2	0.000703
12	2	0.00106
18	2	0.00103
21	2	0.00124
36	2	0.00124
61	2	0.00137
836	2	0.00206
975	2	0.00206
1250	2	0.00206
1490	2	0.00206
1640	2	0.00206
2700	2	0.00207
3280	2	0.00207
6840	2	0.00207
13900	2	0.00207
15000	2	0.00207
17300	2	0.00207
17800	2	0.00207
22900	2	0.00207
7	1	0.00055
10	1	0.000551
23	1	0.000524
27	1	0.000413
28	1	0.000677
38	1	0.000548
39	1	0.000564
40	1	0.000663
44	1	0.000778
45	1	0.000808
46	1	0.000735
47	1	0.000864
48	1	0.00055
51	1	0.000812
67	1	0.000864
70	1	0.000791
92	1	0.000945
93	1	0.000861
109	1	0.00101
136	1	0.00102
146	1	0.00101
166	1	0.00101
203	1	0.00101
213	1	0.00103
298	1	0.00102
537	1	0.00103
605	1	0.00103
932	1	0.00103
1280	1	0.00103
1290	1	0.00103
1480	1	0.00103
1550	1	0.00103
1600	1	0.00103
1750	1	0.00103
2350	1	0.00103
2520	1	0.00103
2560	1	0.00104
2620	1	0.00103
2770	1	0.00103
3000	1	0.00103
3010	1	0.00103
3210	1	0.00103
3620	1	0.00103
3810	1	0.00103
3980	1	0.00103
4020	1	0.00103
4220	1	0.00103
4240	1	0.00104
4680	1	0.00103
5340	1	0.00103
6130	1	0.00104
6160	1	0.00103
7010	1	0.00103
7080	1	0.00104
7210	1	0.00103
7570	1	0.00103
7740	1	0.00103
9860	1	0.00103
10400	1	0.00103
10500	1	0.00103
11800	1	0.00103
11800	1	0.00103
11900	1	0.00103
14100	1	0.00103
14200	1	0.00103
14600	1	0.00103
14700	1	0.00103
16000	1	0.00103
16300	1	0.00103
16700	1	0.00103
20400	1	0.00103
21100	1	0.00103
21300	1	0.00103
21500	1	0.00103
22300	1	0.00103
22800	1	0.00103
25800	1	0.00103
26100	1	0.00103

CL41 ----> CL20

No. of shared pairs: :387

CL41 ----> CL19

No. of shared pairs: :354

CL41 ----> CL5

No. of shared pairs: :241

CL41 ----> CL6

No. of shared pairs: :160

CL41 ----> CL52

No. of shared pairs: :74

CL41 ----> CL9

No. of shared pairs: :61

CL41 ----> CL101

No. of shared pairs: :33

CL41 ----> CL43

No. of shared pairs: :20

CL41 ----> CL15

No. of shared pairs: :19

CL41 ----> CL16

No. of shared pairs: :13

CL41 ----> CL113

No. of shared pairs: :13

CL41 ----> CL184

No. of shared pairs: :13

CL41 ----> CL3

No. of shared pairs: :11

CL41 ----> CL13

No. of shared pairs: :11

CL41 ----> CL91

No. of shared pairs: :11

CL41 ----> CL112

No. of shared pairs: :10