Cluster no. 159

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Cluster is part of supercluster: 103

Cluster characteristics:

size 101
size_real 101
ecount 1238
supercluster 103
annotations_summary 0.99% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.99% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
pair_completeness 0.174418604651163
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.693069306930693
satellite_probability 7.36402052648439e-05
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 30
S9 37
S7 34
comparative analysis - number of edges between species:
S8 S9 S7
S8 92 128 128
S9 128 151 152
S7 128 152 180
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.940 1.050 0.994
S9 1.050 1.010 0.948
S7 0.994 0.948 1.050

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 0.0099
Tork Ty1-RT Tork Ty1-RT 1 0.0099

clusters connected through mates:

Cluster Number of shared
read pairs		 k
26 2 0.00112
64 2 0.00548
2 1 5e-04
12 1 0.00105
13 1 0.000435
15 1 0.000912
18 1 0.000987
19 1 0.000521
28 1 0.00183
39 1 0.00118
55 1 0.00335
59 1 0.00127
78 1 0.00419
80 1 0.00382
90 1 0.00557
233 1 0.0244
13000 1 0.0274
15300 1 0.0274
18300 1 0.0274
24300 1 0.0274