Cluster no. 102

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Cluster is part of supercluster: 48

Cluster characteristics:

size 412
size_real 412
ecount 1745
supercluster 48
annotations_summary 0.24% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
pair_completeness 0.45583038869258
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00242718446601942
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 118
S9 140
S7 154
comparative analysis - number of edges between species:
S8 S9 S7
S8 186 196 193
S9 196 213 197
S7 193 197 173
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.980 0.982 1.040
S9 0.982 1.010 1.010
S7 1.040 1.010 0.952

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-INT Angela Ty1-INT 1 0.0024

clusters with similarity:

Cluster Number of similarity hits
1 14

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1 17 0.00613
80 12 0.0395
90 8 0.0362
2 2 0.000979
28 2 0.0034
200 2 0.02
21600 2 0.0256
4 1 0.000394
10 1 0.00108
12 1 0.00101
13 1 0.000428
16 1 0.00048
144 1 0.00962
864 1 0.0123
1320 1 0.0125
2160 1 0.0125
2180 1 0.0126
3310 1 0.0127
3500 1 0.0127
8100 1 0.0128
10600 1 0.0128
10900 1 0.0128
15300 1 0.0128
16800 1 0.0128
17100 1 0.0128
19400 1 0.0128
22300 1 0.0128
23600 1 0.0128

CL102 ----> CL1

image

No. of shared pairs: :17

CL102 ----> CL80

image

No. of shared pairs: :12