Cluster no. 27

Cluster no. 27

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6275
size_real	6275
ecount	466169
supercluster	1
annotations_summary	0.05% organelle/plastid 0.03% organelle/mitochondria 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.02% Class_II/Subclass_2/Helitron:Helitron-HEL2 0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
pair_completeness	0.366804617730342
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00828685258964143
satellite_probability	1.14691457676211e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	2070
S9	2100
S7	2100

comparative analysis - number of edges between species:

	S8	S9	S7
S8	52400	51600	52500
S9	51600	50800	51500
S7	52500	51500	51900

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.998	0.999	1.000
S9	0.999	1.000	1.000
S7	1.000	1.000	0.996

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

mitochondria mitochondria 2 0.00032

plastid plastid 3 0.00048

Helitron Helitron-HEL2 Helitron Helitron-HEL2 1 0.00016

Tork Ty1-RH Tork Ty1-RH 1 0.00016

Reina Ty3-RT Reina Ty3-RT 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

13	17300
31	5560
43	3750
48	2290
8	1210
38	590
68	269
40	227
18	55
24	16
29	14
12	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

13	752	0.202
48	682	0.296
31	291	0.136
8	249	0.0851
40	207	0.104
43	205	0.0965
16	48	0.0139
68	25	0.0149
29	23	0.0085
24	22	0.00836
38	14	0.00606
4	12	0.00307
18	10	0.00411
2	9	0.00263
63	6	0.00297
1	5	0.0012
9	3	0.000847
1680	3	0.00206
4090	3	0.00206
5340	3	0.00206
11	2	6e-04
21	2	0.00095
22	2	0.000699
23	2	0.000834
36	2	0.000954
50	2	0.00119
58	2	0.00129
61	2	0.00102
70	2	0.00114
3370	2	0.00137
7030	2	0.00137
8010	2	0.00138
15600	2	0.00138
17600	2	0.00138
20200	2	0.00138
23500	2	0.00138
24900	2	0.00138
3	1	0.000224
5	1	0.000243
6	1	0.000252
12	1	0.000422
25	1	0.000537
28	1	0.000509
32	1	0.000338
35	1	0.000419
41	1	0.000413
49	1	0.000446
66	1	0.000582
81	1	0.000503
87	1	0.000629
123	1	0.000669
132	1	0.000678
308	1	0.000681
2810	1	0.000687
2860	1	0.000687
2970	1	0.000687
2980	1	0.000687
3690	1	0.000687
4290	1	0.000687
5850	1	0.000688
7350	1	0.000687
8900	1	0.000688
11600	1	0.000688
14200	1	0.000688
15900	1	0.000688
17200	1	0.000688
18100	1	0.000688
18500	1	0.000688
19200	1	0.000688
19900	1	0.000688
21200	1	0.000688
22500	1	0.000688
22600	1	0.000688
23400	1	0.000688

CL27 ----> CL13

No. of shared pairs: :752

CL27 ----> CL48

No. of shared pairs: :682

CL27 ----> CL31

No. of shared pairs: :291

CL27 ----> CL8

No. of shared pairs: :249

CL27 ----> CL40

No. of shared pairs: :207

CL27 ----> CL43

No. of shared pairs: :205

CL27 ----> CL16

No. of shared pairs: :48

CL27 ----> CL68

No. of shared pairs: :25

CL27 ----> CL29

No. of shared pairs: :23

CL27 ----> CL24

No. of shared pairs: :22

CL27 ----> CL38

No. of shared pairs: :14

CL27 ----> CL4

No. of shared pairs: :12

CL27 ----> CL18

No. of shared pairs: :10