Cluster no. 16

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 7613
size_real 7613
ecount 2625081
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
pair_completeness 0.309425524595803
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.515171417312492
satellite_probability 1.94788781007121e-05
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 2530
S9 2580
S7 2500
comparative analysis - number of edges between species:
S8 S9 S7
S8 295000 300000 285000
S9 300000 305000 290000
S7 285000 290000 275000
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.000 1 0.999
S9 1.000 1 1.000
S7 0.999 1 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-INT Tork Ty1-INT 1 0.00013
Ivana Ty1-RT Ivana Ty1-RT 1 0.00013
TAR Ty1-RT TAR Ty1-RT 1 0.00013
Tekay Ty3-CHDII Tekay Ty3-CHDII 1 0.00013
TatV Ty3-INT TatV Ty3-INT 1 0.00013
Tekay Ty3-INT Tekay Ty3-INT 1 0.00013
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00013
Tekay Ty3-RT Tekay Ty3-RT 1 0.00013

clusters with similarity:

Cluster Number of similarity hits
3 210000
48 5920
24 327
79 67
129 18
91 3
12 1
13 1
26 1
29 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
3 1770 0.352
48 730 0.255
27 48 0.0139
2 44 0.0111
5 40 0.00858
24 34 0.0107
79 31 0.0141
13 26 0.00609
129 21 0.0102
8 18 0.00517
4 17 0.0038
15 17 0.00554
22 17 0.00498
29 16 0.00491
1 15 0.00319
9 14 0.00342
6 13 0.00287
11 13 0.00335
19 13 0.00334
41 13 0.00437
20 12 0.00309
91 12 0.00561
52 11 0.0036
26 10 0.00266
18 9 0.00302
38 9 0.00314
21 8 0.00301
23 8 0.00271
35 8 0.00272
64 8 0.00342
37 7 0.00267
10 6 0.0021
32 6 0.00171
45 6 0.00263
17 5 0.00174
7 4 0.0014
25 4 0.00165
34 4 0.00175
39 4 0.00142
53 4 0.00173
61 4 0.0016
104 4 0.00189
12 3 0.00103
14 3 0.00105
30 3 0.00114
31 3 0.00111
63 3 0.00117
69 3 0.00136
74 3 0.00128
75 3 0.00132
78 3 0.00136
95 3 0.00144
150 3 0.00146
413 3 0.00149
28 2 0.000794
33 2 0.000829
40 2 0.000784
54 2 0.000869
55 2 0.000881
58 2 0.000952
60 2 0.000859
71 2 0.000885
80 2 0.000895
86 2 0.000908
93 2 0.000908
97 2 0.000962
138 2 0.000982
4150 2 0.000995
4290 2 0.000996
42 1 0.000429
44 1 0.00043
46 1 0.000416
50 1 0.000448
51 1 0.00044
56 1 0.000377
62 1 0.000438
65 1 0.000442
66 1 0.00044
67 1 0.000455
68 1 0.000447
70 1 0.000433
72 1 0.000397
73 1 0.000437
76 1 0.000447
84 1 0.000447
88 1 0.000483
89 1 0.00048
101 1 0.000474
102 1 0.00048
107 1 0.000479
112 1 0.000485
115 1 0.000488
131 1 0.000489
144 1 0.000492
147 1 0.000488
169 1 0.000494
175 1 0.000492
183 1 0.000491
194 1 0.000494
197 1 0.000493
247 1 0.000493
249 1 0.000495
258 1 0.000496
291 1 0.000497
295 1 0.000494
313 1 0.000496
328 1 0.000497
351 1 0.000495
380 1 0.000495
507 1 0.000496
592 1 0.000497
809 1 0.000497
1020 1 0.000497
1210 1 0.000498
1370 1 0.000498
1420 1 0.000498
1440 1 0.000498
1480 1 0.000498
1560 1 0.000498
1860 1 0.000498
2150 1 0.000497
2480 1 0.000498
2510 1 0.000498
2620 1 0.000498
2670 1 0.000498
2890 1 0.000498
2990 1 0.000498
3170 1 0.000498
3570 1 0.000498
3730 1 0.000498
3740 1 0.000498
4100 1 0.000498
4210 1 0.000498
4530 1 0.000498
5450 1 0.000498
5470 1 0.000498
5730 1 0.000498
7060 1 0.000498
7350 1 0.000498
9890 1 0.000498
11800 1 0.000498
12400 1 0.000498
14300 1 0.000498
14300 1 0.000498
15100 1 0.000498
15200 1 0.000498
15200 1 0.000498
15600 1 0.000498
15900 1 0.000498
16500 1 0.000498
16900 1 0.000498
18800 1 0.000498
19100 1 0.000498
19400 1 0.000498
19400 1 0.000498
19700 1 0.000498
21400 1 0.000498
21600 1 0.000498
21900 1 0.000498
21900 1 0.000498
25800 1 0.000498
26100 1 0.000498

CL16 ----> CL3

image

No. of shared pairs: :1768

CL16 ----> CL48

image

No. of shared pairs: :730

CL16 ----> CL27

image

No. of shared pairs: :48

CL16 ----> CL2

image

No. of shared pairs: :44

CL16 ----> CL5

image

No. of shared pairs: :40

CL16 ----> CL24

image

No. of shared pairs: :34

CL16 ----> CL79

image

No. of shared pairs: :31

CL16 ----> CL13

image

No. of shared pairs: :26

CL16 ----> CL129

image

No. of shared pairs: :21

CL16 ----> CL8

image

No. of shared pairs: :18

CL16 ----> CL4

image

No. of shared pairs: :17

CL16 ----> CL15

image

No. of shared pairs: :17

CL16 ----> CL22

image

No. of shared pairs: :17

CL16 ----> CL29

image

No. of shared pairs: :16

CL16 ----> CL1

image

No. of shared pairs: :15

CL16 ----> CL9

image

No. of shared pairs: :14

CL16 ----> CL6

image

No. of shared pairs: :13

CL16 ----> CL11

image

No. of shared pairs: :13

CL16 ----> CL19

image

No. of shared pairs: :13

CL16 ----> CL41

image

No. of shared pairs: :13

CL16 ----> CL20

image

No. of shared pairs: :12

CL16 ----> CL91

image

No. of shared pairs: :12

CL16 ----> CL52

image

No. of shared pairs: :11

CL16 ----> CL26

image

No. of shared pairs: :10