Cluster no. 157

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Cluster is part of supercluster: 101

Cluster characteristics:

size 105
size_real 105
ecount 464
supercluster 101
annotations_summary
pair_completeness 0.875
pbs_score 0.0
TR_score 0.6396577380952381
TR_monomer_length 604.0
loop_index 0.714285714285714
satellite_probability 0.0176713776443543
consensus 
GCCCGAACGGTTCCGGATCGCAACCGACCGAACTAGAAAAACGATCGACTCCCCACCGTGGGTTGGGTGGGCGGGGCGGG
TGGTGTGTTCAAGGCACGAGAATTAATTCGAACTGAGGAGGGGTTTTTGGAGCTAGGTCATGGAAATGATCGATTCAAAG
GGCAGAACTGGTCGGCGATTTCCCAGGCTCTGTAGAAAGTCACCACGGTGGCTTTAGAGAGCGCTCCGAACCCTCGATCT
CGGCTTTCGAACTGGCGAACGCAAGTATAGGAATTTCCAGACCAACGCACGCTTCGAAGGCCCGGGCGGTTTGGCGTCTA
CCCATATTACAGAGAAATTTACTATGGAGGTTTCCTAGCCGCTCCAAACCATAGATCTCAGCTTCCGAATTTGCGAAGCC
AAGCGTAGGGATTTCTCGATCGACGTGCGTTTCGGAGGCCCGACGGTTCCGTACCGCGGTCGGGCCAACGAGAATAATGA
TCGGCTGCCGAAACTCGACATTAATTTGCTATGGTAGGTTCCGGGGCGCTCCGTACCCTCGATATCGGCTTTCGAGCTGG
CGAATGCGAGTTTAGAAATTTCTGTAACAACGCGCGTTTCGGAG

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 comparative analysis:


  





 
 Comparative analysis - species read counts:



  

    Species
    Read count
  

   

    S8
    38
  

  

    S9
    31
  

  

    S7
    36
  

 


 
 comparative analysis - number of edges between species:



  

    
    S8
    S9
    S7
  

   

    S8
    58.0
    47
    63.5
  

  

    S9
    47.0
    27
    46.0
  

  

    S7
    63.5
    46
    66.0
  

 


 
 comparative analysis - observed/expected number of edges between species



  

    
    S8
    S9
    S7
  

   

    S8
    0.948
    1.08
    0.996
  

  

    S9
    1.080
    0.87
    1.010
  

  

    S7
    0.996
    1.01
    0.994
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    3
    1
    0.000332
  

  

    17
    1
    0.00114