Cluster no. 71

Cluster no. 71

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Cluster is part of supercluster: 2

Cluster characteristics:

size	1527
size_real	1527
ecount	6735
supercluster	2
annotations_summary	0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness	0.502952755905512
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0189914865749836
satellite_probability	1.27641181786954e-19
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	501
S9	504
S7	522

comparative analysis - number of edges between species:

	S8	S9	S7
S8	669	722	717
S9	722	806	768
S7	717	768	848

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.010	1.000	0.982
S9	1.000	1.030	0.966
S7	0.982	0.966	1.050

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-RH Athila Ty3-RH 1 0.00065

TatV Ty3-RH TatV Ty3-RH 1 0.00065

clusters with similarity:

Cluster	Number of similarity hits

37	15
1	10
28	10
75	4
7	2
90	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

37	123	0.143
1	83	0.0281
28	23	0.0301
75	12	0.0235
7	11	0.00996
320	8	0.0302
67	5	0.0113
594	5	0.0193
17	4	0.00356
687	4	0.0156
1050	4	0.0156
1430	4	0.0156
23	3	0.00251
54	3	0.00548
1260	3	0.0117
1850	3	0.0117
1940	3	0.0117
2870	3	0.0118
7090	3	0.0118
2	2	0.000902
13	2	0.000795
16	2	0.000885
24	2	0.0014
63	2	0.00245
1040	2	0.00786
1170	2	0.00781
1280	2	0.0078
1300	2	0.00783
2300	2	0.00787
3640	2	0.00786
6320	2	0.00787
6	1	0.00036
12	1	0.000857
29	1	0.000665
30	1	0.00115
53	1	0.00181
69	1	0.00224
90	1	0.00252
290	1	0.00383
1120	1	0.00389
1300	1	0.00391
1490	1	0.00392
1490	1	0.00392
1730	1	0.00393
1750	1	0.00391
3060	1	0.00394
3070	1	0.00393
3340	1	0.00393
4090	1	0.00393
6360	1	0.00394
6700	1	0.00394
7030	1	0.00394
8710	1	0.00394
9320	1	0.00394
10700	1	0.00394
11400	1	0.00394
13000	1	0.00394
13700	1	0.00394
14200	1	0.00394
16200	1	0.00394
18300	1	0.00394
20400	1	0.00394
22000	1	0.00394
24600	1	0.00394
25100	1	0.00394

CL71 ----> CL37

No. of shared pairs: :123

CL71 ----> CL1

No. of shared pairs: :83

CL71 ----> CL28

No. of shared pairs: :23

CL71 ----> CL75

No. of shared pairs: :12

CL71 ----> CL7

No. of shared pairs: :11