Cluster no. 101

Cluster no. 101

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Cluster is part of supercluster: 47

Cluster characteristics:

size	428
size_real	428
ecount	2759
supercluster	47
annotations_summary	0.23% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness	0.350157728706625
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00233644859813084
satellite_probability	9.19560910382493e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	135
S9	137
S7	156

comparative analysis - number of edges between species:

	S8	S9	S7
S8	288	284	318
S9	284	264	332
S7	318	332	340

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.000	0.995
S9	1.000	0.941	1.050
S7	0.995	1.050	0.959

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-INT Reina Ty3-INT 1 0.0023

clusters with similarity:

Cluster	Number of similarity hits

11	75
20	10
41	6

clusters connected through mates:

Cluster	Number of shared read pairs	k

41	33	0.0309
20	25	0.0126
231	12	0.103
11	11	0.00555
266	8	0.0714
768	5	0.0461
702	4	0.0365
184	3	0.0253
900	3	0.0282
2520	3	0.0287
3310	3	0.0286
3720	3	0.0286
15	2	0.00172
11600	2	0.0192
17600	2	0.0192
25500	2	0.0192
2	1	0.000483
4	1	0.00039
16	1	0.000474
23	1	0.000956
26	1	0.000541
94	1	0.0076
250	1	0.00889
642	1	0.00913
826	1	0.00935
1130	1	0.00939
1310	1	0.00952
1790	1	0.00952
2810	1	0.00957
2960	1	0.00952
3250	1	0.00952
3600	1	0.00962
3650	1	0.00952
4400	1	0.00957
4950	1	0.00957
5090	1	0.00957
5260	1	0.00957
6270	1	0.00957
8200	1	0.00962
15200	1	0.00962
18100	1	0.00962
22000	1	0.00962
23900	1	0.00962
25300	1	0.00962

CL101 ----> CL41

No. of shared pairs: :33

CL101 ----> CL20

No. of shared pairs: :25

CL101 ----> CL231

No. of shared pairs: :12

CL101 ----> CL11

No. of shared pairs: :11