Cluster no. 156

Go back to cluster table

Cluster is part of supercluster: 100

Cluster characteristics:

size 105
size_real 105
ecount 338
supercluster 100
annotations_summary 100.00% organelle/plastid
pair_completeness 0.810344827586207
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00952380952380952
satellite_probability 3.28054772597604e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 34
S9 37
S7 34
comparative analysis - number of edges between species:
S8 S9 S7
S8 29 38 43
S9 38 34 35
S7 43 35 43
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.81 1.090 1.090
S9 1.09 1.000 0.914
S7 1.09 0.914 0.993

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 105 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1130 5 0.5
467 2 0.2
110 1 0.0526