Cluster no. 81

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 1244
size_real 1244
ecount 244230
supercluster 1
annotations_summary 0.24% organelle/mitochondria
0.08% organelle/plastid
pair_completeness 0.0761245674740484
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0369774919614148
satellite_probability 7.98181918114384e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 456
S9 400
S7 388
comparative analysis - number of edges between species:
S8 S9 S7
S8 33700 28600 28500
S9 28600 24100 24100
S7 28500 24100 24100
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.998 1.000 1
S9 1.000 0.998 1
S7 1.000 1.000 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 0.0024
plastid plastid 1 0.0008

clusters with similarity:

Cluster Number of similarity hits
9 56500
56 11600
26 3160

clusters connected through mates:

Cluster Number of shared
read pairs		 k
9 497 0.19
56 395 0.335
26 87 0.0382
11 38 0.0158
20 9 0.00373
32 2 0.000979
52 2 0.00126
1 1 0.000309
4 1 0.000334
7 1 0.000722
27 1 0.000503
49 1 0.000756
91 1 0.00151
93 1 0.00137
1830 1 0.00187
2400 1 0.00186
4810 1 0.00187
5270 1 0.00187
19000 1 0.00187
22800 1 0.00187

CL81 ----> CL9

image

No. of shared pairs: :497

CL81 ----> CL56

image

No. of shared pairs: :395

CL81 ----> CL26

image

No. of shared pairs: :87

CL81 ----> CL11

image

No. of shared pairs: :38