Cluster no. 94

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Cluster is part of supercluster: 40

Cluster characteristics:

size 577
size_real 577
ecount 4239
supercluster 40
annotations_summary 26.17% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
16.64% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
12.48% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
5.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
pair_completeness 0.82018927444795
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00173310225303293
satellite_probability 1.76339170420733e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 193
S9 197
S7 187
comparative analysis - number of edges between species:
S8 S9 S7
S8 435 504 460
S9 504 516 472
S7 460 472 416
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.943 1.020 1.030
S9 1.020 0.983 0.996
S7 1.030 0.996 0.970

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-INT Athila Ty3-INT 151 0.262
Athila Ty3-PROT Athila Ty3-PROT 34 0.059
Athila Ty3-RH Athila Ty3-RH 72 0.125
Athila Ty3-RT Athila Ty3-RT 96 0.166

clusters connected through mates:

Cluster Number of shared
read pairs		 k
53 15 0.0455
97 8 0.0792
2120 3 0.0952
13 2 0.000873
6500 2 0.0667
22 1 0.000697
23 1 0.00103
42 1 0.00284
44 1 0.00287
68 1 0.00388
98 1 0.012
101 1 0.0076
1340 1 0.0328
3960 1 0.0339
15500 1 0.0339
20000 1 0.0339
21100 1 0.0339

CL94 ----> CL53

image

No. of shared pairs: :15