Cluster no. 86

Cluster no. 86

Go back to cluster table

Cluster is part of supercluster: 25

Cluster characteristics:

size	1016
size_real	1016
ecount	3186
supercluster	25
annotations_summary	0.10% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH
pair_completeness	0.443181818181818
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000984251968503937
satellite_probability	4.69379822868744e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	362
S9	334
S7	320

comparative analysis - number of edges between species:

	S8	S9	S7
S8	361	356	354
S9	356	403	336
S7	354	336	329

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	0.968	1.030
S9	0.968	1.070	0.959
S7	1.030	0.959	1.010

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Ivana Ty1-INT Ivana Ty1-INT 1 0.00098

Tcn1 Ty3-RH Tcn1 Ty3-RH 1 0.00098

Reina Ty3-RT Reina Ty3-RT 1 0.00098

TatV Ty3-RT TatV Ty3-RT 1 0.00098

clusters connected through mates:

Cluster	Number of shared read pairs	k

104	47	0.152
238	13	0.0607
13	5	0.00203
923	4	0.02
2730	4	0.0202
692	3	0.0149
1880	3	0.0152
2660	3	0.0151
5280	3	0.0152
6550	3	0.0152
16	2	0.000908
1590	2	0.0101
1630	2	0.0101
1950	2	0.0101
2310	2	0.0101
2800	2	0.0101
5700	2	0.0101
15700	2	0.0102
19600	2	0.0102
22100	2	0.0102
23300	2	0.0102
1	1	0.000345
2	1	0.000463
4	1	0.000376
23	1	0.000878
24	1	0.000727
26	1	0.000515
36	1	0.00119
61	1	0.00144
70	1	0.00202
74	1	0.00188
79	1	0.00259
228	1	0.00459
278	1	0.00469
2430	1	0.00506
3600	1	0.00508
3710	1	0.00508
3980	1	0.00505
10000	1	0.00508
10400	1	0.00508
10900	1	0.00508
11400	1	0.00508
11600	1	0.00508
11700	1	0.00508
11900	1	0.00508
12700	1	0.00508
15800	1	0.00508
16200	1	0.00508
21300	1	0.00508
22000	1	0.00508
23800	1	0.00508
24500	1	0.00508
25900	1	0.00508

CL86 ----> CL104

No. of shared pairs: :47

CL86 ----> CL238

No. of shared pairs: :13