Cluster no. 61

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Cluster is part of supercluster: 17

Cluster characteristics:

size 2086
size_real 2086
ecount 12488
supercluster 17
annotations_summary 0.10% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.05% Class_I/LINE:LINE-ENDO
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.05% organelle/plastid
pair_completeness 0.353666450356911
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000479386385426654
satellite_probability 9.19560910382493e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 687
S9 689
S7 710
comparative analysis - number of edges between species:
S8 S9 S7
S8 1360 1340 1400
S9 1340 1380 1400
S7 1400 1400 1450
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.010 0.989 1.000
S9 0.989 1.020 0.996
S7 1.000 0.996 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00048
LINE LINE-ENDO LINE LINE-ENDO 1 0.00048
Ale Ty1-INT Ale Ty1-INT 2 0.00096
Tork Ty1-RT Tork Ty1-RT 2 0.00096
TatV Ty3-RT TatV Ty3-RT 1 0.00048

clusters with similarity:

Cluster Number of similarity hits
8 67
18 53
29 10
37 4
13 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
18 116 0.0786
29 50 0.0286
8 11 0.00558
37 10 0.00903
245 9 0.0174
9 5 0.00193
193 5 0.00953
6 4 0.00132
11 4 0.00168
13 4 0.00145
16 4 0.0016
976 4 0.00796
1050 4 0.00797
3 3 0.000855
5 3 0.000952
22 3 0.00157
24 3 0.00179
3580 3 0.006
4580 3 0.00601
2 2 0.000812
4 2 0.000676
19 2 0.000839
21 2 0.00174
23 2 0.00139
27 2 0.00102
31 2 0.00168
38 2 0.00147
41 2 0.00137
44 2 0.00244
84 2 0.00274
104 2 0.00327
1380 2 0.00399
1800 2 0.00399
2250 2 0.004
2460 2 0.004
2630 2 0.004
2980 2 0.00401
3230 2 0.00401
3880 2 0.004
5200 2 0.004
5240 2 0.004
10200 2 0.00401
10500 2 0.00401
13800 2 0.00401
16700 2 0.00401
22500 2 0.00401
24700 2 0.00401
1 1 0.000313
14 1 0.000739
15 1 0.000641
28 1 0.00099
33 1 0.00111
35 1 7e-04
36 1 0.000877
42 1 0.00122
48 1 0.000741
50 1 0.00138
51 1 0.00131
53 1 0.00125
55 1 0.00131
63 1 0.000941
68 1 0.00137
69 1 0.00144
78 1 0.00143
79 1 0.00145
86 1 0.00144
91 1 0.00159
116 1 0.0019
120 1 0.00198
152 1 0.00189
164 1 0.00192
246 1 0.00199
259 1 0.00195
794 1 0.00199
812 1 0.00199
1020 1 0.00199
1230 1 0.00199
1350 1 0.002
1380 1 0.00199
2090 1 0.002
2350 1 0.002
2680 1 0.002
3320 1 0.002
3470 1 0.002
3500 1 0.002
3790 1 0.002
3850 1 0.002
3890 1 0.002
4100 1 0.002
4120 1 0.002
4300 1 0.002
4600 1 0.002
4760 1 0.00201
5040 1 0.002
5060 1 0.002
5330 1 0.002
5650 1 0.002
5830 1 0.002
5890 1 0.002
6130 1 0.002
6140 1 0.002
6280 1 0.002
6860 1 0.00201
6890 1 0.002
7050 1 0.002
10100 1 0.002
10400 1 0.002
10700 1 0.002
11700 1 0.002
11800 1 0.002
11800 1 0.002
12000 1 0.002
12000 1 0.002
12400 1 0.002
14000 1 0.002
14300 1 0.002
14900 1 0.002
15700 1 0.002
16100 1 0.002
16900 1 0.002
18800 1 0.002
19200 1 0.002
20400 1 0.002
20600 1 0.002
21000 1 0.002
21300 1 0.002
21900 1 0.002
23800 1 0.002
24000 1 0.002
24900 1 0.002
25300 1 0.002
25500 1 0.002

CL61 ----> CL18

image

No. of shared pairs: :116

CL61 ----> CL29

image

No. of shared pairs: :50

CL61 ----> CL8

image

No. of shared pairs: :11

CL61 ----> CL37

image

No. of shared pairs: :10