Cluster no. 5

Cluster no. 5

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Cluster is part of supercluster: 1

Cluster characteristics:

size	9455
size_real	9455
ecount	1324389
supercluster	1
annotations_summary	0.31% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-PROT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.01% Class_I/pararetrovirus:PARA-RT
pair_completeness	0.28099173553719
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00327868852459016
satellite_probability	1.30056036622834e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3180
S9	3130
S7	3140

comparative analysis - number of edges between species:

	S8	S9	S7
S8	155000	147000	151000
S9	147000	139000	143000
S7	151000	143000	148000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.000	0.997
S9	1.000	0.999	1.000
S7	0.997	1.000	1.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-RT pararetrovirus PARA-RT 1 0.00011

Ivana Ty1-INT Ivana Ty1-INT 1 0.00011

Reina Ty3-CHDII Reina Ty3-CHDII 29 0.00307

CRM Ty3-GAG CRM Ty3-GAG 1 0.00011

TatV Ty3-PROT TatV Ty3-PROT 2 0.00021

clusters with similarity:

Cluster	Number of similarity hits

6	117000
3	23100
41	618
150	3
128	1
413	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

3	2390	0.422
6	2010	0.389
41	241	0.0666
43	76	0.0229
52	53	0.0143
16	40	0.00858
19	29	0.00639
24	27	0.00704
1	21	0.00392
13	19	0.00387
23	9	0.0025
2	8	0.00173
22	8	0.00197
63	8	0.00249
4	6	0.00117
12	5	0.0014
18	5	0.00138
507	5	0.00188
9	4	0.000844
36	4	0.00121
53	4	0.00135
413	4	0.0015
32	3	0.000721
61	3	0.000952
126	3	0.00111
2480	3	0.00113
15	2	0.000538
29	2	0.000512
48	2	0.000571
150	2	0.000741
3890	2	0.000753
4040	2	0.000753
8	1	0.000242
10	1	0.000285
20	1	0.000221
25	1	0.000326
27	1	0.000243
28	1	0.000316
31	1	0.000299
33	1	0.000327
35	1	0.000279
42	1	0.000336
49	1	0.000291
51	1	0.000342
56	1	0.000303
70	1	0.000339
72	1	0.000316
73	1	0.000341
75	1	0.000344
79	1	0.000352
80	1	0.000347
95	1	0.000366
128	1	0.000371
207	1	0.000375
253	1	0.000375
269	1	0.000376
278	1	0.000374
434	1	0.000376
537	1	0.000376
620	1	0.000376
660	1	0.000376
933	1	0.000376
951	1	0.000376
2310	1	0.000377
2550	1	0.000377
3010	1	0.000377
3020	1	0.000377
4860	1	0.000377
4920	1	0.000377
5330	1	0.000377
7510	1	0.000377
13800	1	0.000377
14800	1	0.000377
15200	1	0.000377
16000	1	0.000377
16100	1	0.000377
19800	1	0.000377
21400	1	0.000377
22300	1	0.000377
23800	1	0.000377
24500	1	0.000377

CL5 ----> CL3

No. of shared pairs: :2389

CL5 ----> CL6

No. of shared pairs: :2014

CL5 ----> CL41

No. of shared pairs: :241

CL5 ----> CL43

No. of shared pairs: :76

CL5 ----> CL52

No. of shared pairs: :53

CL5 ----> CL16

No. of shared pairs: :40

CL5 ----> CL19

No. of shared pairs: :29

CL5 ----> CL24

No. of shared pairs: :27

CL5 ----> CL1

No. of shared pairs: :21

CL5 ----> CL13

No. of shared pairs: :19