Cluster no. 176

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Cluster is part of supercluster: 120

Cluster characteristics:

size	82
size_real	82
ecount	193
supercluster	120
annotations_summary	42.68% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 8.54% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT 1.22% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT 1.22% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT 1.22% Class_I/LTR/Ty1_copia/Ale:Ty1-RT 1.22% Class_I/LTR/Ty1_copia/Tork:Ty1-RT 1.22% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness	0.673469387755102
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0121951219512195
satellite_probability	1.9456658316349e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	36
S9	20
S7	26

comparative analysis - number of edges between species:

	S8	S9	S7
S8	35.0	22.5	24.5
S9	22.5	15.0	14.0
S7	24.5	14.0	21.0

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	1.000	1.030	0.969
S9	1.030	1.090	0.882
S7	0.969	0.882	1.140

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Alesia Ty1-INT Alesia Ty1-INT 1 0.012

Bryco Ty1-INT Bryco Ty1-INT 1 0.012

Ivana Ty1-INT Ivana Ty1-INT 1 0.012

Tork Ty1-INT Tork Ty1-INT 35 0.427

Tork Ty1-PROT Tork Ty1-PROT 7 0.085

Ale Ty1-RT Ale Ty1-RT 1 0.012

Tork Ty1-RT Tork Ty1-RT 1 0.012

clusters connected through mates:

Cluster	Number of shared read pairs	k

1450	3	0.261
531	2	0.16
882	1	0.0769
4190	1	0.1