Cluster no. 3

Cluster no. 3

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size	11002
size_real	11002
ecount	2412438
supercluster	1
annotations_summary	0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
pair_completeness	0.292528195488722
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00772586802399564
satellite_probability	1.1552035631474e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3710
S9	3630
S7	3660

comparative analysis - number of edges between species:

	S8	S9	S7
S8	272000	271000	267000
S9	271000	270000	266000
S7	267000	266000	262000

comparative analysis - observed/expected number of edges between species

	S8	S9	S7
S8	0.999	1	1
S9	1.000	1	1
S7	1.000	1	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 9.1e-05

Ale Ty1-PROT Ale Ty1-PROT 1 9.1e-05

Reina Ty3-CHDII Reina Ty3-CHDII 1 9.1e-05

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 9.1e-05

TatV Ty3-INT TatV Ty3-INT 1 9.1e-05

Tekay Ty3-INT Tekay Ty3-INT 5 4.5e-04

CRM Ty3-PROT CRM Ty3-PROT 1 9.1e-05

Tekay Ty3-RH Tekay Ty3-RH 2 1.8e-04

hAT hAT-TPase hAT hAT-TPase 1 9.1e-05

clusters with similarity:

Cluster	Number of similarity hits

16	210000
24	23800
5	23100
52	345
150	144
91	29
413	3
660	3
13	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

5	2390	0.422
16	1770	0.352
24	992	0.237
6	94	0.017
52	45	0.0111
150	32	0.0105
48	28	0.00725
1	23	0.00403
13	23	0.00436
23	14	0.00354
2	12	0.00241
41	11	0.00277
63	10	0.0028
126	9	0.00295
29	8	0.00188
413	7	0.00232
36	6	0.00164
9	5	0.000981
18	5	0.00125
22	5	0.00113
92	5	0.00161
4	4	0.000731
1680	4	0.00133
12	3	0.000764
19	3	0.000613
21	3	0.000819
61	3	0.000855
91	3	0.000955
3770	3	0.000996
17	2	0.000515
26	2	0.00042
53	2	0.000604
60	2	6e-04
507	2	0.000663
2480	2	0.000664
4860	2	0.000664
12100	2	0.000664
17200	2	0.000664
7	1	0.000259
15	1	0.000246
20	1	0.000204
25	1	0.000292
27	1	0.000224
30	1	0.000276
32	1	0.000221
33	1	0.000293
34	1	0.000304
37	1	0.000276
39	1	0.000262
40	1	0.000281
49	1	0.000263
55	1	0.000305
56	1	0.000273
59	1	0.000266
66	1	0.000305
69	1	0.000312
74	1	0.000299
75	1	0.000306
80	1	0.000309
83	1	0.000301
93	1	0.000312
114	1	0.000325
129	1	0.000326
154	1	0.000328
157	1	0.000332
196	1	0.000331
333	1	0.000331
369	1	0.000331
427	1	0.000331
465	1	0.000332
537	1	0.000331
541	1	0.000331
660	1	0.000332
800	1	0.000332
3620	1	0.000332
4960	1	0.000332
5330	1	0.000332
6100	1	0.000332
6830	1	0.000332
7240	1	0.000332
7500	1	0.000332
7510	1	0.000332
8610	1	0.000332
10300	1	0.000332
11100	1	0.000332
11700	1	0.000332
13200	1	0.000332
14800	1	0.000332
14900	1	0.000332
15200	1	0.000332
16200	1	0.000332
16600	1	0.000332
20300	1	0.000332
21700	1	0.000332
23600	1	0.000332
23700	1	0.000332
24400	1	0.000332
25600	1	0.000332
26000	1	0.000332

CL3 ----> CL5

No. of shared pairs: :2389

CL3 ----> CL16

No. of shared pairs: :1768

CL3 ----> CL24

No. of shared pairs: :992

CL3 ----> CL6

No. of shared pairs: :94

CL3 ----> CL52

No. of shared pairs: :45

CL3 ----> CL150

No. of shared pairs: :32

CL3 ----> CL48

No. of shared pairs: :28

CL3 ----> CL1

No. of shared pairs: :23

CL3 ----> CL13

No. of shared pairs: :23

CL3 ----> CL23

No. of shared pairs: :14

CL3 ----> CL2

No. of shared pairs: :12

CL3 ----> CL41

No. of shared pairs: :11

CL3 ----> CL63

No. of shared pairs: :10