Cluster no. 90

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Cluster is part of supercluster: 36

Cluster characteristics:

size 732
size_real 732
ecount 6453
supercluster 36
annotations_summary 0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.14% organelle/plastid
pair_completeness 0.435294117647059
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00546448087431694
satellite_probability 9.71787494816826e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 260
S9 231
S7 241
comparative analysis - number of edges between species:
S8 S9 S7
S8 656 708 686
S9 708 781 762
S7 686 762 702
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 1.01 0.990 1.00
S9 0.99 0.994 1.02
S7 1.00 1.020 0.98

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0014
TatV Ty3-INT TatV Ty3-INT 1 0.0014

clusters with similarity:

Cluster Number of similarity hits
1 52
37 16
71 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
37 29 0.0385
1 28 0.00985
15 23 0.0191
429 9 0.0584
102 8 0.0362
472 4 0.0262
761 4 0.0268
1350 4 0.027
463 3 0.0194
685 3 0.0199
1380 3 0.0203
1760 3 0.0204
4 2 0.000768
18 2 0.00178
23 2 0.00184
36 2 0.00254
943 2 0.0134
11100 2 0.0138
13400 2 0.0138
2 1 0.000474
11 1 0.000494
12 1 0.000945
19 1 0.000493
21 1 0.00126
22 1 0.000645
26 1 0.000529
30 1 0.00131
42 1 0.00214
45 1 0.00241
50 1 0.0027
51 1 0.00244
58 1 0.0042
63 1 0.00141
69 1 0.00295
71 1 0.00252
78 1 0.00288
93 1 0.00295
159 1 0.00557
221 1 0.00664
229 1 0.00621
287 1 0.00645
1890 1 0.00685
2820 1 0.00692
3660 1 0.00685
5360 1 0.00687
5530 1 0.00687
5540 1 0.00687
6660 1 0.00687
6760 1 0.00692
8190 1 0.0069
10200 1 0.0069
10900 1 0.0069
17500 1 0.0069
19700 1 0.0069
19900 1 0.0069
22800 1 0.0069
24600 1 0.0069
25000 1 0.0069

CL90 ----> CL37

image

No. of shared pairs: :29

CL90 ----> CL1

image

No. of shared pairs: :28

CL90 ----> CL15

image

No. of shared pairs: :23