Cluster no. 114

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Cluster is part of supercluster: 59

Cluster characteristics:

size 249
size_real 249
ecount 1696
supercluster 59
annotations_summary
pair_completeness 0.338709677419355
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00401606425702811
satellite_probability 9.7548493215956e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 91
S9 78
S7 80
comparative analysis - number of edges between species:
S8 S9 S7
S8 229 186 218
S9 186 128 162
S7 218 162 207
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.971 1.050 0.994
S9 1.050 0.956 0.985
S7 0.994 0.985 1.020

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
4 46

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 19 0.00753
13 17 0.00732
431 6 0.0845
434 4 0.0571
1310 3 0.0458
1 1 0.000362
3 1 0.000325
11 1 0.000515
12 1 0.00103
24 1 0.000806
35 1 0.00101
40 1 0.00165
93 1 0.00389
286 1 0.0136
2380 1 0.0156
2860 1 0.0157
4360 1 0.0159
4520 1 0.0159
5920 1 0.0159
6080 1 0.0161
7400 1 0.0159
7840 1 0.016
12800 1 0.016
13200 1 0.016
19000 1 0.016
21800 1 0.016
22400 1 0.016
24600 1 0.016

CL114 ----> CL4

image

No. of shared pairs: :19

CL114 ----> CL13

image

No. of shared pairs: :17