Cluster no. 127
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Cluster is part of supercluster: 72
Cluster characteristics:
| size |
179 |
| size_real |
179 |
| ecount |
641 |
| supercluster |
72 |
| annotations_summary |
|
| pair_completeness |
0.335820895522388 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00558659217877095 |
| satellite_probability |
1.17646958017996e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S8 |
61 |
| S9 |
61 |
| S7 |
57 |
comparative analysis - number of edges between species:
|
S8 |
S9 |
S7 |
| S8 |
73 |
78 |
70 |
| S9 |
78 |
65 |
72 |
| S7 |
70 |
72 |
63 |
comparative analysis - observed/expected number of edges between species
|
S8 |
S9 |
S7 |
| S8 |
0.958 |
1.050 |
0.990 |
| S9 |
1.050 |
0.901 |
1.050 |
| S7 |
0.990 |
1.050 |
0.961 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 1 |
23 |
0.00838 |
| 39 |
21 |
0.0246 |
| 6250 |
3 |
0.0652 |
| 15 |
2 |
0.00181 |
| 37 |
2 |
0.00306 |
| 53 |
1 |
0.00289 |
| 830 |
1 |
0.0206 |
| 1150 |
1 |
0.0217 |
|
CL127 ----> CL1
No. of shared pairs: :23
CL127 ----> CL39
No. of shared pairs: :21