Cluster no. 95

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Cluster is part of supercluster: 41

Cluster characteristics:

size 576
size_real 576
ecount 5586
supercluster 41
annotations_summary 2.78% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.17% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.17% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
pair_completeness 0.578082191780822
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00173611111111111
satellite_probability 1.00051650786948e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 182
S9 184
S7 210
comparative analysis - number of edges between species:
S8 S9 S7
S8 481 544 640
S9 544 591 673
S7 640 673 801
comparative analysis - observed/expected number of edges between species
S8 S9 S7
S8 0.97 1.010 1.020
S9 1.01 1.010 0.984
S7 1.02 0.984 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-RH Angela Ty1-RH 1 0.0017
Angela Ty1-RT Angela Ty1-RT 16 0.0278
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.0017

clusters connected through mates:

Cluster Number of shared
read pairs		 k
168 4 0.0385
16 3 0.00144
1 2 0.000721
5600 2 0.0255
2 1 0.00049
5 1 0.000366
10 1 0.00108
13 1 0.000428
17 1 0.00106
22 1 0.000674
24 1 0.000796
50 1 0.00329
80 1 0.00329
2740 1 0.0126
3950 1 0.0127
4760 1 0.0127
5860 1 0.0127
6460 1 0.0127
9400 1 0.0128
10500 1 0.0128
18700 1 0.0128
25500 1 0.0128